Gene omics information

Query gene ID	Contig10728_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	94.0	Contig10728_at	Contig10728	-	-	4e+0	At5g04520	unknown protein	S.X.	H.G.	Please select
0.83	94.0	HV05L09r_s_at	HV05L09r	-	-	1e-3	At2g45200	GOS12 (GOLGI SNARE 12)	S.X.	H.G.	Please select
0.77	90.8	HV05M01u_at	HV05M01u	-	-	8e+0	At5g41700	UBC8 (UBIQUITIN CONJUGATING ENZYME 8)	S.X.	H.G.	Please select
0.67	84.7	Contig7753_at	Contig7753	-	-	7e+0	At1g29395	COR414-TM1	S.X.	H.G.	Please select
0.55	72.0	Contig2490_at	Contig2490	-	-	1e-6	At1g62660	beta-fructosidase (BFRUCT3) / beta-fructofuranosidase / invertase, vacuolar	S.X.	H.G.	Please select
0.31	38.6	Contig16389_at	Contig16389	-	-	4e-9	At3g20440	alpha-amylase/ catalytic/ cation binding	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
71.8	100.0	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
71.8	100.0	GSM440976	Control seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
61.9	100.0	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
34.6	99.9	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
26.9	99.8	GSM440980	Stressed seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
25.8	99.8	GSM440979	Stressed seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
19.0	99.7	GSM440978	Stressed seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
12.9	99.4	GSM419983	Seed_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
12.9	99.4	GSM440977	Control seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
11.1	99.2	GSM419981	Seed_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-2	38	Contig127_s_at	Contig127	-	-	1e-74	At1g50010	TUA2	C.G.	S.X.	Please select
0.02	1e-1	36	Contig15924_at	Contig15924	-	-	2e+0	At3g06490	MYB108 (myb domain protein 108)	C.G.	S.X.	Please select
0.00	1e-1	36	Contig21662_at	Contig21662	-	-	1e+0	At5g11160	APT5 (Adenine phosphoribosyltransferase 5)	C.G.	S.X.	Please select
0.03	1e-1	36	HVSMEk0012J02r2_at	HVSMEk0012J02r2	-	-	4e-3	At3g62870	60S ribosomal protein L7A (RPL7aB)	C.G.	S.X.	Please select
0.02	5e-1	34	Contig12039_at	Contig12039	beclin 1 protein	-	5e-1	At3g06820	mov34 family protein	C.G.	S.X.	Please select
0.03	5e-1	34	Contig3050_at	Contig3050	-	-	2e-3	At2g47710	universal stress protein (USP) family protein	C.G.	S.X.	Please select
0.02	5e-1	34	Contig11375_at	Contig11375	-	-	4e-2	At1g51700	ADOF1	C.G.	S.X.	Please select
0.02	5e-1	34	Contig10851_at	Contig10851	-	-	2e-1	At5g34940	AtGUS3 (Arabidopsis thaliana glucuronidase 3)	C.G.	S.X.	Please select
0.02	5e-1	34	Contig10648_at	Contig10648	-	-	6e-20	At1g65590	HEXO3 (BETA-HEXOSAMINIDASE 3)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e+0	32	Arabidopsis thaliana	At5g04520	830331	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPFM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	PsAffx.psZG006xO11f_s_at	PsAffx.psZG006xO11f	-	-	3e+0	At5g30341	unknown protein	C.G.	S.X.	Please select
0.08	6e-7	56	Oryza sativa	OsAffx.22569.1.S1_x_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	1e+0	34	Populus trichocarpa	PtpAffx.209982.1.S1_at	pmrna19694	hypothetical protein	-	1e+0	At1g49715	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.44	9e-134	476	Triticum aestivum	Ta.885.1.S1_at	BJ238471	-	-	1e+1	At5g27810	sequence-specific DNA binding / transcription factor	C.G.	S.X.	Please select
0.04	5e+0	30	Vitis vinifera	1619438_at	CF404138	-	-	2e-2	At2g01660	PDLP6 (PLASMODESMATA-LOCATED PROTEIN 6)	C.G.	S.X.	Please select
0.21	5e-10	63	Zea mays	Zm.18999.1.A1_at	CO520868	-	-	6e+0	At4g05070	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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