Gene omics information

Query gene ID	Contig10699_at
Gene name	Mg-protoporphyrin IX
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.40	53.1	Contig10699_at	Contig10699	Mg-protoporphyrin IX	-	2e-23	At1g08520	CHLD	S.X.	H.G.	Please select
0.91	98.1	Contig807_s_at	Contig807	-	-	6e-53	At1g55490	CPN60B (CHAPERONIN 60 BETA)	S.X.	H.G.	Please select
0.67	84.7	Contig12332_at	Contig12332	-	-	4e+0	At3g50410	OBP1 (OBF BINDING PROTEIN 1)	S.X.	H.G.	Please select
0.57	74.9	Contig13202_at	Contig13202	-	-	2e+0	At3g02150	PTF1 (PLASTID TRANSCRIPTION FACTOR 1)	S.X.	H.G.	Please select
0.40	53.1	Contig26369_at	Contig26369	-	-	4e+0	At4g02620	vacuolar ATPase subunit F family protein	S.X.	H.G.	Please select
0.33	42.6	Contig11177_at	Contig11177	-	-	5e-1	At5g53730	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.0	99.1	GSM261036	Dicktoo-subzero-rep1	GSE10329	Low temperature stress in cv. Dicktoo
9.8	99.1	GSM261032	Dicktoo control-rep3	GSE10329	Low temperature stress in cv. Dicktoo
9.8	99.1	GSM161200	cold treatment rep1	GSE6993	Barley low temperature stress
9.5	99.0	GSM261040	Dicktoo-deacclimation-rep2	GSE10329	Low temperature stress in cv. Dicktoo
9.3	99.0	GSM261030	Dicktoo-control-rep1	GSE10329	Low temperature stress in cv. Dicktoo
8.8	98.9	GSM161221	cold treatment rep3	GSE6993	Barley low temperature stress
8.7	98.9	GSM160744	drought control rep2	GSE6990	Barley drought stress
8.6	98.8	GSM160815	drought control rep3	GSE6990	Barley drought stress
8.5	98.8	GSM261021	ABA-Control-rep1	GSE10328	ABA experiment
8.5	98.8	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e-3	44	Contig13490_at	Contig13490	-	-	4e-10	At1g08720	EDR1 (ENHANCED DISEASE RESISTANCE 1)	C.G.	S.X.	Please select
0.02	1e-3	44	Contig12717_at	Contig12717	-	-	2e-4	At5g60990	DEAD/DEAH box helicase, putative (RH10)	C.G.	S.X.	Please select
0.02	6e-3	42	Contig17954_at	Contig17954	-	-	2e+0	At3g63050	unknown protein	C.G.	S.X.	Please select
0.01	6e-3	42	Contig12632_at	Contig12632	-	-	2e-1	At1g69700	ATHVA22C	C.G.	S.X.	Please select
0.02	6e-3	42	Contig9246_at	Contig9246	-	-	6e-1	At3g17490	F-box family protein	C.G.	S.X.	Please select
0.02	6e-3	42	Contig6954_at	Contig6954	-	-	5e-1	At3g17330	ECT6 (evolutionarily conserved C-terminal region 6)	C.G.	S.X.	Please select
0.01	6e-3	42	Contig6953_at	Contig6953	-	-	3e+0	At5g24440	CID13 (CTC-Interacting Domain 13)	C.G.	S.X.	Please select
0.01	2e-2	40	Contig2465_at	Contig2465	-	-	1e-135	At1g20260	hydrogen ion transporting ATP synthase, rotational mechanism / hydrolase, acting on acid anhydrides, catalyzing transmembrane movement of substances / proton-transporting ATPase, rotational mechanism	C.G.	S.X.	Please select
0.02	9e-2	38	HVSMEb0019C19f_at	HVSMEb0019C19f	-	-	6e-12	At3g08690	UBC11 (UBIQUITIN-CONJUGATING ENZYME 11)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.27	2e-23	111	Arabidopsis thaliana	At1g08520	837374	CHLD	F:magnesium chelatase activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:chlorophyll biosynthetic process;C:magnesium chelatase complex, chloroplast;MOBFPVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.43	3e-53	210	Glycine max	GmaAffx.88399.1.S1_at	CA819362	-	-	2e-49	At1g08520	CHLD	C.G.	S.X.	Please select
0.46	0	956	Oryza sativa	Os03g0811100	AK072463.1	-	Magnesium-chelatase subunit chlD, chloroplastprecursor (EC 6.6.1.1) (Mg-protoporphyrin IX chelatase)(Mg-chelatase subunit D)	1e-25	At1g08520	CHLD	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.28	1e-49	198	Populus trichocarpa	PtpAffx.44982.1.S1_at	DN490971	hypothetical protein	-	3e-137	At1g08520	CHLD	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.74	0	977	Triticum aestivum	Ta.317.1.S1_at	BG905389	-	-	1e-18	At1g08520	CHLD	C.G.	S.X.	Please select
0.03	1e-2	40	Vitis vinifera	1618771_s_at	CD715283	hypothetical protein LOC100262843	-	3e-4	At1g25560	TEM1 (TEMPRANILLO 1)	C.G.	S.X.	Please select
0.02	1e+0	34	Zea mays	Zm.6828.1.A1_at	AI396546	-	-	2e-1	At1g02710	glycine-rich protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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