Gene omics information

Query gene ID	Contig10689_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig10689_at	Contig10689	-	-	3e-10	At2g40360	transducin family protein / WD-40 repeat family protein	S.X.	H.G.	Please select
0.67	84.7	Contig9421_at	Contig9421	-	-	3e-7	At5g19690	STT3A (STAUROSPORIN AND TEMPERATURE SENSITIVE 3-LIKE A)	S.X.	H.G.	Please select
0.55	72.0	Contig10688_at	Contig10688	-	-	8e+0	At5g65430	GRF8 (GENERAL REGULATORY FACTOR 8)	S.X.	H.G.	Please select
0.50	66.9	Contig13383_at	Contig13383	-	-	1e-8	At2g48010	RKF3 (RECEPTOR-LIKE KINASE IN IN FLOWERS 3)	S.X.	H.G.	Please select
0.44	58.9	Contig21173_at	Contig21173	-	-	3e-23	At2g35190	NPSN11 (NOVEL PLANT SNARE 11)	S.X.	H.G.	Please select
0.15	14.1	Contig7824_at	Contig7824	-	-	1e+1	At5g23100	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
19.3	99.7	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
14.4	99.5	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
14.0	99.5	GSM282026	Malting_day1_Legacy_rep4	GSE11200	Expression data from malting barley seeds
10.7	99.2	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
10.0	99.1	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
8.9	98.9	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.7	98.3	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.8	97.8	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
5.8	97.8	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.8	97.8	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	5e-1	36	Contig16689_at	Contig16689	-	-	1e+0	At1g43890	ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18)	C.G.	S.X.	Please select
0.01	2e+0	34	Contig4994_at	Contig4994	-	-	4e-1	At2g16060	AHB1 (ARABIDOPSIS HEMOGLOBIN 1)	C.G.	S.X.	Please select
0.01	2e+0	34	Contig1860_x_at	Contig1860	-	-	2e-3	At5g66390	peroxidase 72 (PER72) (P72) (PRXR8)	C.G.	S.X.	Please select
0.01	2e+0	34	Contig1860_s_at	Contig1860	-	-	2e-3	At5g66390	peroxidase 72 (PER72) (P72) (PRXR8)	C.G.	S.X.	Please select
0.01	2e+0	34	Contig20736_at	Contig20736	-	-	2e-40	At4g26110	NAP1	C.G.	S.X.	Please select
0.01	2e+0	34	Contig10705_at	Contig10705	-	-	9e-13	At3g56850	AREB3 (ABA-RESPONSIVE ELEMENT BINDING PROTEIN 3)	C.G.	S.X.	Please select
0.01	2e+0	34	Contig8832_at	Contig8832	-	-	9e-1	At3g14830	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	34	Contig4994_s_at	Contig4994	-	-	4e-1	At2g16060	AHB1 (ARABIDOPSIS HEMOGLOBIN 1)	C.G.	S.X.	Please select
0.01	8e+0	32	Contig5414_at	Contig5414	-	-	3e-11	At5g67590	FRO1 (FROSTBITE1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.13	3e-10	67	Arabidopsis thaliana	At2g40360	818629	transducin family protein / WD-40 repeat family protein	F:nucleotide binding;P:rRNA processing;C:nucleus;BMOFPVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	2e-2	42	Glycine max	Gma.10646.2.S1_a_at	BU764205	-	-	1e-13	At2g40360	transducin family protein / WD-40 repeat family protein	C.G.	S.X.	Please select
0.62	0	1524	Oryza sativa	Os07g0435400	AK111603.1	-	WD40-like domain containing protein	1e-6	At2g40360	transducin family protein / WD-40 repeat family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.11	1e-19	99	Populus trichocarpa	PtpAffx.223240.1.S1_s_at	pmrna41130	hypothetical protein	-	1e-42	At2g40360	transducin family protein / WD-40 repeat family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.40	0	983	Triticum aestivum	Ta.20442.3.S1_at	BJ226520	-	-	1e+0	At1g62920	-	C.G.	S.X.	Please select
0.11	6e-9	61	Vitis vinifera	1611134_at	CF210141	hypothetical protein LOC100260644	-	1e-7	At2g40360	transducin family protein / WD-40 repeat family protein	C.G.	S.X.	Please select
0.01	1e-1	38	Zea mays	Zm.9213.1.A1_at	BM267362	hypothetical protein LOC100278667	-	5e+0	At5g45590	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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