Gene omics information

Query gene ID	Contig10688_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig10688_at	Contig10688	-	-	8e+0	At5g65430	GRF8 (GENERAL REGULATORY FACTOR 8)	S.X.	H.G.	Please select
0.73	88.7	Contig13383_at	Contig13383	-	-	1e-8	At2g48010	RKF3 (RECEPTOR-LIKE KINASE IN IN FLOWERS 3)	S.X.	H.G.	Please select
0.67	84.7	Contig26243_s_at	Contig26243	-	-	4e-6	At3g17300	-	S.X.	H.G.	Please select
0.67	84.7	Contig10689_at	Contig10689	-	-	3e-10	At2g40360	transducin family protein / WD-40 repeat family protein	S.X.	H.G.	Please select
0.44	58.9	EBpi01_SQ001_A05_s_at	EBpi01_SQ001_A05	-	-	3e+0	At2g31005	-	S.X.	H.G.	Please select
0.19	19.6	Contig21173_at	Contig21173	-	-	3e-23	At2g35190	NPSN11 (NOVEL PLANT SNARE 11)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.7	96.9	GSM311249	28-4_without_aphids_1	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
4.3	96.4	GSM238426	Endosperm 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM372953	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.0	96.0	GSM372971	genotype: Mla6 - pathogen isolates: K1 - time: 32 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.8	95.7	GSM372941	genotype: Mla6 - pathogen isolates: 5874 - time: 8 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.6	95.3	GSM372942	genotype: Mla6 - pathogen isolates: 5874 - time: 8 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.5	95.1	GSM310866	lina_without_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
3.4	94.8	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
3.3	94.6	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.1	94.1	GSM372969	genotype: Mla6 - pathogen isolates: K1 - time: 24 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e-2	40	Contig24882_at	Contig24882	-	-	9e-1	At3g09032	unknown protein	C.G.	S.X.	Please select
0.02	7e-2	38	Contig8386_at	Contig8386	-	-	1e-4	At5g54680	ILR3 (iaa-leucine resistant3)	C.G.	S.X.	Please select
0.02	7e-2	38	Contig8818_at	Contig8818	-	-	2e+0	At5g47080	CKB1	C.G.	S.X.	Please select
0.02	3e-1	36	Contig7646_at	Contig7646	-	-	9e-6	At1g51590	mannosyl-oligosaccharide 1,2-alpha-mannosidase, putative	C.G.	S.X.	Please select
0.02	3e-1	36	Contig14285_at	Contig14285	-	-	2e-2	At5g37360	unknown protein	C.G.	S.X.	Please select
0.01	3e-1	36	Contig7263_at	Contig7263	-	-	5e-2	At5g63330	-	C.G.	S.X.	Please select
0.02	3e-1	36	Contig5477_at	Contig5477	-	-	2e-13	At4g26860	pyridoxal phosphate binding	C.G.	S.X.	Please select
0.01	1e+0	34	Contig7529_at	Contig7529	-	-	5e-5	At4g32400	SHS1 (SODIUM HYPERSENSITIVE 1)	C.G.	S.X.	Please select
0.02	1e+0	34	Contig22860_at	Contig22860	-	-	4e-1	At1g67030	ZFP6 (ZINC FINGER PROTEIN 6)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	8e+0	32	Arabidopsis thaliana	At5g65430	836668	GRF8 (GENERAL REGULATORY FACTOR 8)	member of 14-3-3 proteins. This protein is reported to interact with the BZR1 transcription factor involved in brassinosteroid signaling and may affect the nucleocytoplasmic shuttling of BZR1	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	5e-2	40	Glycine max	GmaAffx.89975.1.S1_at	CF805700	-	-	3e-1	At4g14410	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please select
0.43	2e-70	268	Oryza sativa	Os02g0116600	AK103434.1	-	Basic helix-loop-helix dimerisation region bHLHdomain containing protein	7e-1	At5g43175	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e-1	38	Populus trichocarpa	PtpAffx.17445.1.S1_a_at	CK090987	hypothetical protein	-	7e-75	At5g54680	ILR3 (iaa-leucine resistant3)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.50	3e-175	615	Triticum aestivum	TaAffx.117651.1.S1_s_at	CA659377	-	-	2e+1	At5g01800	saposin B domain-containing protein	C.G.	S.X.	Please select
0.02	3e+0	32	Vitis vinifera	1621757_at	CF373247	-	-	8e-1	At1g29960	peptidase/ serine-type peptidase	C.G.	S.X.	Please select
0.34	1e-33	143	Zea mays	Zm.6653.1.S1_at	CA404358	hypothetical protein LOC100274393	-	6e-4	At5g54680	ILR3 (iaa-leucine resistant3)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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