Gene omics information

Query gene ID	Contig10661_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	66.9	Contig10661_at	Contig10661	-	-	2e+0	At3g15680	zinc finger (Ran-binding) family protein	S.X.	H.G.	Please select
0.71	87.1	Contig2343_s_at	Contig2343	-	-	1e+0	At5g26010	catalytic/ protein serine/threonine phosphatase	S.X.	H.G.	Please select
0.60	77.3	Contig11477_at	Contig11477	-	-	8e-5	At1g79040	PSBR (photosystem II subunit R)	S.X.	H.G.	Please select
0.50	66.9	Contig10945_at	Contig10945	-	-	3e+0	At5g24110	WRKY30	S.X.	H.G.	Please select
0.50	66.9	Contig7360_at	Contig7360	-	-	3e+0	At4g19620	unknown protein	S.X.	H.G.	Please select
0.31	38.6	Contig1512_at	Contig1512	-	-	0	At5g12250	TUB6 (BETA-6 TUBULIN)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
34.8	99.9	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
27.7	99.8	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
19.9	99.7	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
7.4	98.5	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.9	98.3	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.5	98.2	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.3	97.4	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.3	97.4	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.0	97.2	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.8	97.0	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-1	36	HVSMEm0006M10r2_at	HVSMEm0006M10r2	-	-	4e+0	At5g36659	-	C.G.	S.X.	Please select
0.03	2e-1	36	Contig19584_at	Contig19584	-	-	2e+0	At1g72360	ethylene-responsive element-binding protein, putative	C.G.	S.X.	Please select
0.02	2e-1	36	Contig3221_at	Contig3221	-	-	2e-5	At5g64040	PSAN	C.G.	S.X.	Please select
0.02	9e-1	34	Contig197_at	Contig197	-	-	1e-24	At5g59690	histone H4	C.G.	S.X.	Please select
0.02	9e-1	34	Contig175_x_at	Contig175	-	-	6e-24	At5g59690	histone H4	C.G.	S.X.	Please select
0.02	9e-1	34	Contig14660_at	Contig14660	-	-	5e-1	At4g28830	methyltransferase/ nucleic acid binding	C.G.	S.X.	Please select
0.02	9e-1	34	Contig20_at	Contig20	-	-	3e-22	At5g59690	histone H4	C.G.	S.X.	Please select
0.02	9e-1	34	Contig197_s_at	Contig197	-	-	1e-24	At5g59690	histone H4	C.G.	S.X.	Please select
0.02	9e-1	34	Contig26_at	Contig26	-	-	2e-17	At5g59690	histone H4	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+0	34	Arabidopsis thaliana	At3g15680	820811	zinc finger (Ran-binding) family protein	F:binding, zinc ion binding;P:biological_process unknown;C:intracellular;MPOFB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	1e-2	42	Glycine max	GmaAffx.29926.2.S1_s_at	AI966630	-	-	2e-17	At3g47730	ATATH1	C.G.	S.X.	Please select
0.51	9e-78	291	Oryza sativa	Os09g0420600	AK072629.1	-	PDZ/DHR/GLGF domain containing protein	2e-3	At1g15860	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	3e+0	34	Populus trichocarpa	PtpAffx.249.667.S1_a_at	CV278012	hypothetical protein	-	6e-2	At2g32650	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.81	0	1146	Triticum aestivum	Ta.766.1.S1_at	BJ272590	-	-	2e+0	At3g15680	zinc finger (Ran-binding) family protein	C.G.	S.X.	Please select
0.03	1e-1	36	Vitis vinifera	1608885_at	CB977031	hypothetical protein LOC100260494	-	4e+0	At4g38090	unknown protein	C.G.	S.X.	Please select
0.45	2e-51	202	Zea mays	Zm.5728.1.S1_at	CF635798	hypothetical protein LOC100272678	-	2e-1	At5g57950	26S proteasome regulatory subunit, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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