Gene omics information

Query gene ID	Contig10647_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	88.7	Contig10647_at	Contig10647	-	-	2e-46	At2g20930	-	S.X.	H.G.	Please select
0.60	77.3	Contig11284_at	Contig11284	-	-	9e-6	At2g22475	GEM (GL2-EXPRESSION MODULATOR)	S.X.	H.G.	Please select
0.53	69.7	Contig8766_at	Contig8766	-	-	8e-7	At4g12130	aminomethyltransferase	S.X.	H.G.	Please select
0.44	58.9	Contig11618_at	Contig11618	-	-	5e+0	At2g11890	adenylate cyclase	S.X.	H.G.	Please select
0.37	47.9	Contig13332_at	Contig13332	-	-	2e+0	At1g68280	thioesterase-related	S.X.	H.G.	Please select
0.35	45.1	Contig9632_at	Contig9632	-	-	1e-1	At1g78370	ATGSTU20 (GLUTATHIONE S-TRANSFERASE TAU 20)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.1	98.9	GSM419976	Palea_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
9.1	98.9	GSM440964	Control palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
8.1	98.7	GSM419973	Lemma_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
8.1	98.7	GSM440958	Control lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress
6.4	98.1	GSM419979	Awn_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
6.4	98.1	GSM440970	Control awn_Rep2	GSE17669	Gene expression in the barley spike during drought stress
4.2	96.3	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.8	95.7	GSM146377	Maythorpe shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.8	95.7	GSM146374	Golden Promise shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.5	95.1	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	1e-2	40	Contig7958_s_at	Contig7958	-	-	7e-8	At2g02040	PTR2 (PEPTIDE TRANSPORTER 2)	C.G.	S.X.	Please select
0.01	1e-2	40	Contig7958_at	Contig7958	-	-	7e-8	At2g02040	PTR2 (PEPTIDE TRANSPORTER 2)	C.G.	S.X.	Please select
0.02	2e-1	36	Contig13009_at	Contig13009	-	-	1e-38	At5g04900	short-chain dehydrogenase/reductase (SDR) family protein	C.G.	S.X.	Please select
0.02	7e-1	34	X70876_at	X70876	-	-	7e-19	At4g38620	MYB4	C.G.	S.X.	Please select
0.03	7e-1	34	HU11F12u_at	HU11F12u	-	-	1e+0	At5g50490	NF-YC5 (NUCLEAR FACTOR Y, SUBUNIT C5)	C.G.	S.X.	Please select
0.03	7e-1	34	HD08C14r_at	HD08C14r	-	-	6e-2	At5g04440	unknown protein	C.G.	S.X.	Please select
0.02	7e-1	34	Contig10480_at	Contig10480	-	-	5e-1	At2g35920	helicase domain-containing protein	C.G.	S.X.	Please select
0.02	7e-1	34	Contig5534_at	Contig5534	-	-	2e-10	At2g26670	TED4 (REVERSAL OF THE DET PHENOTYPE 4)	C.G.	S.X.	Please select
0.03	3e+0	32	HT10L13u_s_at	HT10L13u	-	-	4e+0	At3g22500	ATECP31	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.52	2e-46	186	Arabidopsis thaliana	At2g20930	816627	-	F:molecular_function unknown;P:transport, ER to Golgi vesicle-mediated transport;C:intracellular;MFOP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.36	1e-56	220	Glycine max	Gma.16382.1.S1_at	AW317554	-	-	2e-61	At2g20930	-	C.G.	S.X.	Please select
0.55	7e-155	547	Oryza sativa	Os09g0541500	AK060244.1	-	Longin-like domain containing protein	3e-29	At2g20930	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.34	6e-19	95	Populus trichocarpa	PtpAffx.5486.1.S1_at	CV256117	hypothetical protein	-	1e-32	At2g20930	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.74	0	789	Triticum aestivum	Ta.21086.1.S1_a_at	CD864763	-	-	4e-38	At2g20930	-	C.G.	S.X.	Please select
0.39	2e-46	184	Vitis vinifera	1617590_s_at	CF513756	hypothetical protein LOC100241847	-	3e-26	At2g20930	-	C.G.	S.X.	Please select
0.53	7e-158	555	Zea mays	Zm.16350.1.S1_at	CF349260	hypothetical protein LOC100273959	-	6e-31	At2g20930	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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