Gene omics information

Query gene ID	Contig1063_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	77.3	Contig1063_s_at	Contig1063	-	-	1e-74	At1g31340	RUB1 (RELATED TO UBIQUITIN 1)	S.X.	H.G.	Please select
0.35	45.1	Contig13783_at	Contig13783	-	-	4e-1	At2g41225	unknown protein	S.X.	H.G.	Please select
0.33	42.6	Contig8876_at	Contig8876	-	-	2e+0	At3g25577	unknown protein	S.X.	H.G.	Please select
0.33	42.6	Contig12434_at	Contig12434	-	-	2e-6	At4g30930	NFD1 (NUCLEAR FUSION DEFECTIVE 1)	S.X.	H.G.	Please select
0.29	35.5	Contig4158_at	Contig4158	-	-	8e-63	At1g60780	HAP13 (HAPLESS 13)	S.X.	H.G.	Please select
0.29	35.5	Contig6826_s_at	Contig6826	-	-	8e-1	At2g15535	LCR10 (Low-molecular-weight cysteine-rich 10)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
18.0	99.7	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.1	98.7	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.6	98.6	GSM213436	Barley seeds with P. aeruginosa PAO1 for 12hr	GSE8618	P. aeruginosa virulent factor to barley
6.3	98.1	GSM213443	Barley seeds with P. aeruginosa PA5021 mutant for 12hr	GSE8618	P. aeruginosa virulent factor to barley
5.1	97.3	GSM238422	Endosperm 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.9	97.1	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.6	95.3	GSM238424	Endosperm 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.5	95.1	GSM238425	Endosperm 48 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.3	94.6	GSM238426	Endosperm 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.51	1e-113	408	Contig1030_s_at	Contig1030	-	-	7e-83	At1g31340	RUB1 (RELATED TO UBIQUITIN 1)	C.G.	S.X.	Please select
0.52	3e-105	381	Contig1086_at	Contig1086	-	-	2e-67	At2g35635	UBQ7	C.G.	S.X.	Please select
0.38	3e-77	287	rbaal23m05_at	rbaal23m05	-	-	6e+0	At5g46873	-	C.G.	S.X.	Please select
0.27	2e-59	228	Contig1108_s_at	Contig1108	-	-	1e-71	At3g52590	UBQ1 (UBIQUITIN EXTENSION PROTEIN 1)	C.G.	S.X.	Please select
0.22	4e-58	224	Contig1072_s_at	Contig1072	-	-	2e-133	At4g05050	UBQ11 (UBIQUITIN 11)	C.G.	S.X.	Please select
0.23	1e-57	222	Contig1040_at	Contig1040	-	-	3e-48	At2g36170	ubiquitin extension protein 2 (UBQ2) / 60S ribosomal protein L40 (RPL40A)	C.G.	S.X.	Please select
0.30	2e-53	208	rbah61h03_x_at	rbah61h03	-	-	5e-61	At4g05050	UBQ11 (UBIQUITIN 11)	C.G.	S.X.	Please select
0.25	4e-52	204	Contig1106_s_at	Contig1106	-	-	6e-83	At4g02890	UBQ14	C.G.	S.X.	Please select
0.19	5e-51	200	Contig1051_s_at	Contig1051	-	-	0	At4g05320	UBQ10 (POLYUBIQUITIN 10)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.61	1e-74	280	Arabidopsis thaliana	At1g31340	840023	RUB1 (RELATED TO UBIQUITIN 1)	Encodes a ubiquitin-related protein that is conjugated to target proteins by neddylation. It has been shown to be conjugated to the cullin AtCUL1. The RUB-conjugation pathway has been implicated in in auxin response.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.37	4e-57	222	Glycine max	Gma.18087.1.S1_at	BI967917	-	-	7e-46	At1g31340	RUB1 (RELATED TO UBIQUITIN 1)	C.G.	S.X.	Please select
0.59	0	638	Oryza sativa	Os09g0420800	AK099513.1	-	Ubiquitin (Fragment)	1e-62	At1g31340	RUB1 (RELATED TO UBIQUITIN 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.51	5e-78	291	Populus trichocarpa	PtpAffx.37008.1.S1_at	CV269534	hypothetical protein	-	7e-58	At1g31340	RUB1 (RELATED TO UBIQUITIN 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.78	0	811	Triticum aestivum	Ta.2550.1.S1_a_at	BJ285354	-	-	5e-31	At1g31340	RUB1 (RELATED TO UBIQUITIN 1)	C.G.	S.X.	Please select
0.48	1e-69	262	Vitis vinifera	1609603_s_at	CB340030	hypothetical protein LOC100241051	-	1e-71	At1g31340	RUB1 (RELATED TO UBIQUITIN 1)	C.G.	S.X.	Please select
0.54	8e-164	575	Zea mays	Zm.12132.2.S1_at	CF015301	polyubiquitin 2	-	1e-53	At1g31340	RUB1 (RELATED TO UBIQUITIN 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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