Gene omics information

Query gene ID	Contig10627_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig10627_at	Contig10627	-	-	1e-5	At5g62270	-	S.X.	H.G.	Please select
0.50	66.9	Contig14748_at	Contig14748	-	-	5e+0	At4g02482	chloroplast outer envelope GTP-binding protein, putative	S.X.	H.G.	Please select
0.33	42.6	EBro02_SQ006_L04_x_at	EBro02_SQ006_L04	-	-	2e+1	At5g39010	unknown protein	S.X.	H.G.	Please select
0.29	35.5	Contig17530_at	Contig17530	-	-	6e-3	At4g00380	XH/XS domain-containing protein / XS zinc finger domain-containing protein	S.X.	H.G.	Please select
0.26	30.4	EBro02_SQ006_L04_at	EBro02_SQ006_L04	-	-	2e+1	At5g39010	unknown protein	S.X.	H.G.	Please select
0.13	11.6	Contig14554_at	Contig14554	-	-	7e+0	At5g06240	emb2735 (embryo defective 2735)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.0	99.2	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
8.5	98.8	GSM282027	Malting_day1_Legacy_rep2	GSE11200	Expression data from malting barley seeds
8.2	98.7	GSM282028	Malting_day1_Merit_rep1	GSE11200	Expression data from malting barley seeds
7.9	98.7	GSM282029	Malting_day1_Merit_rep3	GSE11200	Expression data from malting barley seeds
7.8	98.6	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.7	98.3	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds
6.2	98.0	GSM238438	Embryo 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.1	98.0	GSM282039	Malting_day4_Morex_rep2	GSE11200	Expression data from malting barley seeds
6.1	98.0	GSM282020	Malting_day4_Legacy_rep 3	GSE11200	Expression data from malting barley seeds
6.0	97.9	GSM282022	Malting_day4_Merit_rep4	GSE11200	Expression data from malting barley seeds

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-2	40	Contig10712_at	Contig10712	-	-	2e+0	At1g12090	ELP (EXTENSIN-LIKE PROTEIN)	C.G.	S.X.	Please select
0.02	9e-2	38	Contig7666_s_at	Contig7666	-	-	3e-3	At5g67400	peroxidase 73 (PER73) (P73) (PRXR11)	C.G.	S.X.	Please select
0.02	9e-2	38	Contig17571_at	Contig17571	-	-	4e-1	At4g22666	-	C.G.	S.X.	Please select
0.02	9e-2	38	Contig16703_at	Contig16703	-	-	4e-1	At1g04370	ATERF14 (Ethylene-responsive element binding factor 14)	C.G.	S.X.	Please select
0.02	9e-2	38	Contig7666_at	Contig7666	-	-	3e-3	At5g67400	peroxidase 73 (PER73) (P73) (PRXR11)	C.G.	S.X.	Please select
0.02	4e-1	36	EBro08_SQ012_M02_at	EBro08_SQ012_M02	-	-	1e+0	At3g04400	emb2171 (embryo defective 2171)	C.G.	S.X.	Please select
0.01	4e-1	36	Contig12494_at	Contig12494	-	-	6e+0	At5g49440	unknown protein	C.G.	S.X.	Please select
0.01	4e-1	36	Contig6018_at	Contig6018	-	-	5e-18	At5g56580	MKK6 (MAP KINASE KINASE 6)	C.G.	S.X.	Please select
0.02	4e-1	36	Contig11480_at	Contig11480	-	-	1e+0	At1g76200	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.12	1e-5	52	Arabidopsis thaliana	At5g62270	836348	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFMO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.20	3e-13	77	Glycine max	GmaAffx.76750.1.S1_at	BF071393	-	-	1e-3	At5g62270	-	C.G.	S.X.	Please select
0.54	4e-146	519	Oryza sativa	Os01g0801700	AK073813.1	-	Conserved hypothetical protein	1e-5	At5g62270	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.12	1e-9	65	Populus trichocarpa	PtpAffx.146961.2.A1_a_at	DN490009	hypothetical protein	-	2e-44	At5g62270	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.86	0	896	Triticum aestivum	Ta.6011.1.S1_at	BQ619793	-	-	8e-4	At5g62270	-	C.G.	S.X.	Please select
0.02	2e-1	36	Vitis vinifera	1607170_s_at	CB917184	-	-	5e-2	At3g44735	PSK1	C.G.	S.X.	Please select
0.44	7e-132	470	Zea mays	Zm.10138.1.S1_at	BM334083	hypothetical protein LOC100193812	-	8e-7	At5g62270	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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