CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig10621_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 94.0 Contig10621_at Contig10621 - - 4e-1 At1g14315 - S.X. H.G.
0.60 77.3 Contig6884_s_at Contig6884 - - 9e-5 At4g34100 protein binding / zinc ion binding S.X. H.G.
0.46 61.0 Contig5857_at Contig5857 - - 2e-1 At1g02965 unknown protein S.X. H.G.
0.40 53.1 Contig15213_at Contig15213 - - 1e-1 At4g27745 - S.X. H.G.
0.21 22.6 Contig5087_at Contig5087 - - 1e-2 At4g17520 nuclear RNA-binding protein, putative S.X. H.G.
0.19 19.6 HVSMEg0010L05r2_at HVSMEg0010L05r2 - - 2e+0 At2g45610 hydrolase S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
16.8 99.6 GSM213441 Barley seeds control in Hoagland solution for 12hr GSE8618 P. aeruginosa virulent factor to barley
9.8 99.1 GSM238417 Endosperm 16DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
9.6 99.0 GSM238416 Endosperm 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
9.5 99.0 GSM213436 Barley seeds with P. aeruginosa PAO1 for 12hr GSE8618 P. aeruginosa virulent factor to barley
8.4 98.8 GSM213443 Barley seeds with P. aeruginosa PA5021 mutant for 12hr GSE8618 P. aeruginosa virulent factor to barley
7.8 98.6 GSM238419 Endosperm 25DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
7.5 98.6 GSM261045 after 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
7.2 98.5 GSM238418 Endosperm 25DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.6 97.7 GSM261047 after 3 days in mannitol medium rep3 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.4 97.5 GSM238432 Embryo 0 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 5e-2 38 Contig10901_at Contig10901 - - 1e-29 At2g43130 ARA4 C.G. S.X.
0.02 2e-1 36 Contig22470_at Contig22470 - - 4e-1 At3g08980 signal peptidase I family protein C.G. S.X.
0.01 8e-1 34 Contig11648_at Contig11648 - - 5e-13 At5g04360 ATLDA (LIMIT DEXTRINASE) C.G. S.X.
0.02 8e-1 34 Contig7646_at Contig7646 - - 9e-6 At1g51590 mannosyl-oligosaccharide 1,2-alpha-mannosidase, putative C.G. S.X.
0.02 8e-1 34 Contig3743_at Contig3743 - - 8e-4 At1g19180 JAZ1 (JASMONATE-ZIM-DOMAIN PROTEIN 1) C.G. S.X.
0.01 8e-1 34 Contig5658_at Contig5658 - - 2e-1 At1g23740 oxidoreductase, zinc-binding dehydrogenase family protein C.G. S.X.
0.02 8e-1 34 Contig4022_at Contig4022 - - 5e-4 At5g16400 ATF2 C.G. S.X.
0.01 8e-1 34 Contig3419_at Contig3419 - - 7e-5 At5g48385 - C.G. S.X.
0.02 8e-1 34 Contig2789_at Contig2789 - - 5e-1 At1g75040 PR5 (PATHOGENESIS-RELATED GENE 5) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 4e-1 36 Arabidopsis thaliana At1g14315 6241224 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO - - - C.G. S.X.
0.03 1e-1 38 Glycine max PsAffx.C106000017_at PsAffx.C106000017 - - 8e+0 At3g15250 unknown protein C.G. S.X.
0.13 1e-15 85 Oryza sativa OsAffx.23086.1.S1_at - - - 0 C.G. S.X.
0.03 2e+0 34 Populus trichocarpa PtpAffx.202636.1.S1_at pmrna5272 hypothetical protein - 6e-1 At4g17215 unknown protein C.G. S.X.
0.70 4e-149 527 Triticum aestivum Ta.10125.2.S1_at BJ228868 - - 4e+0 At5g13850 NACA3 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 3) C.G. S.X.
0.03 8e+0 30 Vitis vinifera 1620163_x_at CK138257.1 hypothetical protein LOC100247965 - 6e-4 At2g38905 hydrophobic protein, putative / low temperature and salt responsive protein, putative C.G. S.X.
0.07 1e-8 59 Zea mays Zm.8421.1.A1_at BM340353 hypothetical protein LOC100216763 - 7e+0 At3g12300 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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