Gene omics information

Query gene ID	Contig10592_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	87.1	Contig10592_at	Contig10592	-	-	1e-2	At5g26180	NOL1/NOP2/sun family protein	S.X.	H.G.	Please select
0.67	84.7	Contig11977_at	Contig11977	-	-	6e-1	At5g62490	ATHVA22B	S.X.	H.G.	Please select
0.53	69.7	Contig14103_at	Contig14103	-	-	2e-1	At4g19040	EDR2	S.X.	H.G.	Please select
0.50	66.9	Contig12784_at	Contig12784	-	-	2e-10	At1g28520	VOZ1 (VASCULAR PLANT ONE ZINC FINGER PROTEIN)	S.X.	H.G.	Please select
0.42	55.2	Contig9392_at	Contig9392	-	-	5e+0	At5g62780	DNAJ heat shock N-terminal domain-containing protein	S.X.	H.G.	Please select
0.40	53.1	Contig9449_s_at	Contig9449	-	-	3e-18	At2g27350	OTU-like cysteine protease family protein	S.X.	H.G.	Please select
0.39	50.5	Contig9752_at	Contig9752	-	-	3e+0	At2g11651	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.6	99.2	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
9.3	99.0	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
7.0	98.4	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.0	98.4	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.8	97.8	GSM282027	Malting_day1_Legacy_rep2	GSE11200	Expression data from malting barley seeds
5.6	97.7	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
5.0	97.2	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
5.0	97.2	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.9	97.1	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.5	96.7	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	2e+0	34	Contig7420_at	Contig7420	-	-	1e-5	At4g15470	-	C.G.	S.X.	Please select
0.01	2e+0	34	Contig9636_at	Contig9636	-	-	7e-16	At1g48170	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	34	Contig26466_at	Contig26466	-	-	3e+0	At3g42960	ATA1 (ARABIDOPSIS TAPETUM 1)	C.G.	S.X.	Please select
0.01	2e+0	34	Contig16936_at	Contig16936	-	-	4e-2	At2g04700	ferredoxin thioredoxin reductase catalytic beta chain family protein	C.G.	S.X.	Please select
0.01	2e+0	34	Contig1393_at	Contig1393	-	-	1e-42	At3g46520	ACT12 (ACTIN-12)	C.G.	S.X.	Please select
0.02	6e+0	32	HVSMEl0011G03r2_at	HVSMEl0011G03r2	-	-	9e+0	At5g27400	unknown protein	C.G.	S.X.	Please select
0.01	6e+0	32	Contig4392_at	Contig4392	-	-	5e-8	At3g17940	aldose 1-epimerase family protein	C.G.	S.X.	Please select
0.01	6e+0	32	Contig7279_at	Contig7279	-	-	4e-2	At3g14110	FLU (FLUORESCENT IN BLUE LIGHT)	C.G.	S.X.	Please select
0.01	6e+0	32	Contig14281_at	Contig14281	-	-	2e-16	At1g24610	SET domain-containing protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e-2	42	Arabidopsis thaliana	At5g26180	832687	NOL1/NOP2/sun family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMFAPV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	1e+0	36	Glycine max	GmaAffx.63183.1.A1_at	BU549924	-	-	2e-2	At1g06923	-	C.G.	S.X.	Please select
0.58	2e-83	311	Oryza sativa	Os02g0217800	9630.m01145	-	Bacterial Fmu (Sun)/eukaryotic nucleolarNOL1/Nop2p domain containing protein	2e+0	At5g26180	NOL1/NOP2/sun family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	3e-13	77	Populus trichocarpa	PtpAffx.17028.1.S1_at	CV241702	hypothetical protein	-	2e-17	At5g26180	NOL1/NOP2/sun family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.63	0	1112	Triticum aestivum	Ta.9189.1.S1_at	BE516473	-	-	2e+0	At1g61300	disease resistance protein (NBS-LRR class), putative	C.G.	S.X.	Please select
0.02	9e-1	34	Vitis vinifera	1621841_at	BQ796797	hypothetical protein LOC100258708	-	9e-3	Atcg01000	-	C.G.	S.X.	Please select
0.32	1e-68	260	Zea mays	Zm.13035.1.A1_at	CA403687	NOL1R	-	6e+0	At5g05530	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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