Gene omics information

Query gene ID	Contig10570_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.96	99.4	Contig10570_at	Contig10570	-	-	6e-8	At4g38250	amino acid transporter family protein	S.X.	H.G.	Please select
0.42	55.2	Contig6423_at	Contig6423	-	-	1e-3	At2g34040	apoptosis inhibitory 5 (API5) family protein	S.X.	H.G.	Please select
0.40	53.1	Contig9258_at	Contig9258	-	-	3e-1	At2g20515	unknown protein	S.X.	H.G.	Please select
0.39	50.5	Contig1326_s_at	Contig1326	-	-	7e-2	At1g22885	unknown protein	S.X.	H.G.	Please select
0.36	47.1	Contig5792_at	Contig5792	-	-	2e+0	At2g31730	ethylene-responsive protein, putative	S.X.	H.G.	Please select
0.33	42.6	Contig11477_at	Contig11477	-	-	8e-5	At1g79040	PSBR (photosystem II subunit R)	S.X.	H.G.	Please select
0.30	37.0	Contig1512_at	Contig1512	-	-	0	At5g12250	TUB6 (BETA-6 TUBULIN)	S.X.	H.G.	Please select
0.27	32.1	Contig13413_at	Contig13413	-	-	1e+0	At3g46210	3' exoribonuclease family domain 1-containing protein	S.X.	H.G.	Please select
0.23	26.1	Contig8444_at	Contig8444	-	-	3e-6	At2g28250	NCRK	S.X.	H.G.	Please select
0.22	24.2	HS07L08u_s_at	HS07L08u	-	-	1e+0	At5g11710	epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
18.1	99.7	GSM261072	Albina f-17 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
17.9	99.7	GSM238422	Endosperm 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
13.1	99.4	GSM261071	Albina f-17 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
12.0	99.3	GSM261059	Xantha b-12 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
11.0	99.2	GSM261060	Xantha b-12 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
10.2	99.1	GSM261078	Albina e-16 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
9.5	99.0	GSM282026	Malting_day1_Legacy_rep4	GSE11200	Expression data from malting barley seeds
8.6	98.8	GSM261066	Xantha s-46 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
8.2	98.7	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.2	98.5	GSM261077	Albina e-16 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e-4	48	Contig12522_at	Contig12522	-	-	4e-11	At3g04880	DRT102 (DNA-DAMAGE-REPAIR/TOLERATION 2)	C.G.	S.X.	Please select
0.01	7e-3	42	Contig6725_at	Contig6725	-	-	3e-40	At5g05580	FAD8 (FATTY ACID DESATURASE 8)	C.G.	S.X.	Please select
0.02	1e-1	38	HVSMEn0014K19r2_at	HVSMEn0014K19r2	-	-	4e+0	At2g44195	unknown protein	C.G.	S.X.	Please select
0.01	1e-1	38	Contig25368_at	Contig25368	-	-	8e-2	At4g36770	UDP-glycosyltransferase/ transferase, transferring glycosyl groups	C.G.	S.X.	Please select
0.02	1e-1	38	Contig2999_at	Contig2999	-	-	6e-7	At5g09220	AAP2 (AMINO ACID PERMEASE 2)	C.G.	S.X.	Please select
0.02	1e-1	38	Contig2996_at	Contig2996	-	-	6e-2	At5g09220	AAP2 (AMINO ACID PERMEASE 2)	C.G.	S.X.	Please select
0.01	4e-1	36	Contig6807_at	Contig6807	-	-	8e-19	At2g20840	secretory carrier membrane protein (SCAMP) family protein	C.G.	S.X.	Please select
0.01	4e-1	36	Contig17328_at	Contig17328	-	-	3e-2	At4g38020	tRNA/rRNA methyltransferase (SpoU) family protein	C.G.	S.X.	Please select
0.01	4e-1	36	Contig25757_at	Contig25757	-	-	4e+0	At5g11680	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	6e-8	59	Arabidopsis thaliana	At4g38250	829982	amino acid transporter family protein	F:amino acid transmembrane transporter activity;P:amino acid transport;C:membrane;MPFOBAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	3e-1	38	Glycine max	PsAffx.psHB033xN19f_s_at	PsAffx.psHB033xN19f	-	-	2e+1	At3g42150	unknown protein	C.G.	S.X.	Please select
0.55	5e-124	446	Oryza sativa	Os04g0565500	AK058888.1	-	Amino acid transporter protein-like	5e-2	At5g65990	amino acid transporter family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	1e+0	36	Populus trichocarpa	PtpAffx.218900.1.S1_at	pmrna34650	hypothetical protein	-	1e+1	At3g02550	LBD41 (LOB DOMAIN-CONTAINING PROTEIN 41)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.83	0	1774	Triticum aestivum	Ta.7536.1.S1_at	BQ801732	-	-	3e-4	At5g65990	amino acid transporter family protein	C.G.	S.X.	Please select
0.03	2e-2	40	Vitis vinifera	1609370_at	CB972302	hypothetical protein LOC100252511	-	3e-12	At5g65990	amino acid transporter family protein	C.G.	S.X.	Please select
0.51	2e-157	555	Zea mays	Zm.16326.1.S1_at	CO523105	hypothetical protein LOC100274361	-	4e-9	At5g65990	amino acid transporter family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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