Gene omics information

Query gene ID	Contig1056_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	92.5	Contig1056_s_at	Contig1056	-	-	5e-140	At4g05050	UBQ11 (UBIQUITIN 11)	S.X.	H.G.	Please select
0.73	88.7	Contig13783_at	Contig13783	-	-	4e-1	At2g41225	unknown protein	S.X.	H.G.	Please select
0.67	84.7	Contig14599_at	Contig14599	-	-	3e-2	At3g17160	unknown protein	S.X.	H.G.	Please select
0.67	84.7	Contig13988_at	Contig13988	-	-	5e-4	At4g24020	NLP7 (NIN LIKE PROTEIN 7)	S.X.	H.G.	Please select
0.57	74.9	Contig6826_s_at	Contig6826	-	-	8e-1	At2g15535	LCR10 (Low-molecular-weight cysteine-rich 10)	S.X.	H.G.	Please select
0.50	66.9	Contig12434_at	Contig12434	-	-	2e-6	At4g30930	NFD1 (NUCLEAR FUSION DEFECTIVE 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.6	97.7	GSM261071	Albina f-17 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.6	97.7	GSM261078	Albina e-16 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.5	97.6	GSM261072	Albina f-17 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.3	97.4	GSM261069	Albina f-17 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.2	97.4	GSM261068	Albina f-17 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.8	97.0	GSM261066	Xantha s-46 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.6	96.8	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.6	96.8	GSM261077	Albina e-16 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.5	96.7	GSM261065	Xantha s-46 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.5	96.7	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.65	0	1076	rbaal1o24_at	rbaal1o24	-	-	4e-50	At4g05050	UBQ11 (UBIQUITIN 11)	C.G.	S.X.	Please select
0.65	0	1023	Contig1050_s_at	Contig1050	-	-	4e-162	At4g02890	UBQ14	C.G.	S.X.	Please select
0.60	0	995	Contig1078_x_at	Contig1078	-	-	0	At4g02890	UBQ14	C.G.	S.X.	Please select
0.65	0	952	Contig1048_at	Contig1048	-	-	2e-130	At4g02890	UBQ14	C.G.	S.X.	Please select
0.63	0	918	Contig1094_s_at	Contig1094	-	-	2e-123	At4g02890	UBQ14	C.G.	S.X.	Please select
0.55	0	906	Contig1051_s_at	Contig1051	-	-	0	At4g05320	UBQ10 (POLYUBIQUITIN 10)	C.G.	S.X.	Please select
0.66	0	872	Contig1114_x_at	Contig1114	-	-	2e-111	At4g05050	UBQ11 (UBIQUITIN 11)	C.G.	S.X.	Please select
0.61	0	813	Contig1072_s_at	Contig1072	-	-	2e-133	At4g05050	UBQ11 (UBIQUITIN 11)	C.G.	S.X.	Please select
0.57	0	747	Contig1046_s_at	Contig1046	-	-	4e-84	At4g02890	UBQ14	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.66	5e-140	498	Arabidopsis thaliana	At4g05050	825847	UBQ11 (UBIQUITIN 11)	polyubiquitin gene, belongs to a subtype group with UBQ10 and UBQ14. Various ecotypes of Arabidopsis have different numbers of ubiquitin repeats within this gene.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.64	2e-168	593	Glycine max	GmaAffx.93644.1.S1_x_at	CF806647	Ubiquitin	-	7e-139	At4g05320	UBQ10 (POLYUBIQUITIN 10)	C.G.	S.X.	Please select
0.58	0	801	Oryza sativa	Os02g0161900	AK101547.1	-	Ubiquitin	0	At4g05320	UBQ10 (POLYUBIQUITIN 10)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.55	3e-114	412	Populus trichocarpa	Ptp.222.2.A1_x_at	BP932909	-	-	2e-105	At1g65350	UBQ13	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.67	0	1023	Triticum aestivum	TaAffx.128584.1.S1_s_at	CK154688	-	-	1e-101	At4g02890	UBQ14	C.G.	S.X.	Please select
0.50	9e-68	256	Vitis vinifera	1607636_at	CF405749	hypothetical protein LOC100259635	-	4e-104	At5g03240	UBQ3 (POLYUBIQUITIN 3)	C.G.	S.X.	Please select
0.54	2e-177	621	Zea mays	Zm.7727.4.S1_s_at	CF972403	polyubiquitin containing 7 ubiquitin monomers /// ubiquitin /// polyubiquitin	-	2e-102	At4g05320	UBQ10 (POLYUBIQUITIN 10)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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