Gene omics information

Query gene ID	Contig10535_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	77.3	Contig10535_at	Contig10535	-	-	1e-4	At3g14080	small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative	S.X.	H.G.	Please select
0.25	28.9	Contig14475_s_at	Contig14475	-	-	3e-2	At4g12050	DNA-binding protein-related	S.X.	H.G.	Please select
0.24	27.2	Contig9614_at	Contig9614	-	-	3e-17	At2g17240	unknown protein	S.X.	H.G.	Please select
0.18	18.2	Contig12438_at	Contig12438	-	-	2e-5	At5g08740	NDC1 (NAD(P)H dehydrogenase C1)	S.X.	H.G.	Please select
0.15	14.1	Contig682_s_at	Contig682	-	-	9e-13	At3g10410	scpl49 (serine carboxypeptidase-like 49)	S.X.	H.G.	Please select
0.13	11.6	Contig4218_at	Contig4218	-	-	1e-19	At1g26270	phosphatidylinositol 3- and 4-kinase family protein	S.X.	H.G.	Please select
0.12	10.4	Contig12612_at	Contig12612	-	-	5e-3	At1g01170	ozone-responsive stress-related protein, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
15.3	99.6	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
9.9	99.1	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
9.7	99.0	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
9.5	99.0	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
9.2	99.0	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
8.5	98.8	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.5	98.6	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.2	98.5	GSM261030	Dicktoo-control-rep1	GSE10329	Low temperature stress in cv. Dicktoo
5.8	97.8	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.7	97.7	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.77	0	979	Contig10534_s_at	Contig10534	-	-	3e-7	At3g14080	small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative	C.G.	S.X.	Please select
0.03	2e-1	36	Contig11007_at	Contig11007	-	-	4e+0	Atmg00980	-	C.G.	S.X.	Please select
0.03	7e-1	34	HS08K24u_at	HS08K24u	-	-	1e+0	At5g29000	myb family transcription factor	C.G.	S.X.	Please select
0.03	7e-1	34	HVSMEf0003G07r2_at	HVSMEf0003G07r2	-	-	5e-1	At1g58170	disease resistance-responsive protein-related / dirigent protein-related	C.G.	S.X.	Please select
0.02	7e-1	34	Contig10566_at	Contig10566	-	-	2e-1	At1g50120	-	C.G.	S.X.	Please select
0.02	3e+0	32	Contig16984_at	Contig16984	-	-	6e+0	At4g34050	caffeoyl-CoA 3-O-methyltransferase, putative	C.G.	S.X.	Please select
0.02	3e+0	32	Contig12522_at	Contig12522	-	-	4e-11	At3g04880	DRT102 (DNA-DAMAGE-REPAIR/TOLERATION 2)	C.G.	S.X.	Please select
0.02	3e+0	32	Contig11403_at	Contig11403	-	-	2e-6	At2g38840	guanylate-binding family protein	C.G.	S.X.	Please select
0.01	3e+0	32	Contig8055_at	Contig8055	-	-	7e-2	At5g10320	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.15	1e-4	48	Arabidopsis thaliana	At3g14080	820624	small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative	F:molecular_function unknown;P:unknown;C:small nucleolar ribonucleoprotein complex, nucleus;MFPOA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.15	9e-3	42	Glycine max	GmaAffx.80717.1.S1_at	BE058825	-	-	7e-36	At3g14080	small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative	C.G.	S.X.	Please select
0.38	2e-121	436	Oryza sativa	Os.6415.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.13	1e-11	71	Populus trichocarpa	PtpAffx.11404.1.S1_at	CV267147	hypothetical protein	-	7e-26	At3g14080	small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.61	0	704	Triticum aestivum	Ta.7576.3.S1_a_at	CA601584	-	-	7e-5	At3g14080	small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative	C.G.	S.X.	Please select
0.06	1e-1	36	Vitis vinifera	1620433_at	CD721687	-	-	2e-18	At3g14080	small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative	C.G.	S.X.	Please select
0.31	1e-85	315	Zea mays	Zm.16322.1.A1_at	BG873909	hypothetical protein LOC100280029	-	2e+0	At5g62330	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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