Gene omics information

Query gene ID	Contig10520_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	66.9	Contig10520_s_at	Contig10520	-	-	3e-1	At4g39990	RABA4B (RAB GTPASE HOMOLOG A4B)	S.X.	H.G.	Please select
0.80	92.5	Contig12984_at	Contig12984	-	-	3e-1	At3g17611	ATRBL14 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 14)	S.X.	H.G.	Please select
0.67	84.7	Contig13303_at	Contig13303	-	-	4e-1	At4g10480	nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative	S.X.	H.G.	Please select
0.55	72.0	Contig5586_at	Contig5586	-	-	2e-8	At1g48350	ribosomal protein L18 family protein	S.X.	H.G.	Please select
0.50	66.9	Contig11819_s_at	Contig11819	-	-	3e-3	At1g08320	bZIP family transcription factor	S.X.	H.G.	Please select
0.38	49.5	Contig5159_at	Contig5159	-	-	1e-23	At5g17440	LUC7 N_terminus domain-containing protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.7	99.0	GSM215727	Control (DMSO) treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
8.8	98.9	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.6	98.6	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
7.5	98.6	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
7.4	98.5	GSM440961	Stressed lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress
7.3	98.5	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
7.2	98.5	GSM215730	Control (DMSO) treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
7.1	98.4	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
7.0	98.4	GSM398268	HS41-1_3d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
6.6	98.2	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e-2	40	Contig21914_at	Contig21914	-	-	5e-2	At1g64130	unknown protein	C.G.	S.X.	Please select
0.02	1e-2	40	Contig19616_at	Contig19616	-	-	2e-10	At2g43850	ankyrin protein kinase, putative (APK1)	C.G.	S.X.	Please select
0.01	4e-2	38	Contig4949_at	Contig4949	-	-	3e-53	At5g13000	ATGSL12 (glucan synthase-like 12)	C.G.	S.X.	Please select
0.05	4e-2	38	Contig22071_at	Contig22071	-	-	5e+0	At3g24450	copper-binding family protein	C.G.	S.X.	Please select
0.03	4e-2	38	Contig10061_s_at	Contig10061	-	-	3e-8	At1g01650	aspartic-type endopeptidase/ peptidase	C.G.	S.X.	Please select
0.04	4e-2	38	Contig9042_x_at	Contig9042	-	-	3e+0	At3g56580	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.03	4e-2	38	HI02P10u_at	HI02P10u	-	-	2e-1	At5g28950	unknown protein	C.G.	S.X.	Please select
0.03	4e-2	38	Contig23044_at	Contig23044	-	-	1e+0	At5g10260	AtRABH1e (Arabidopsis Rab GTPase homolog H1e)	C.G.	S.X.	Please select
0.04	4e-2	38	Contig9042_s_at	Contig9042	-	-	3e+0	At3g56580	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-1	36	Arabidopsis thaliana	At4g39990	830160	RABA4B (RAB GTPASE HOMOLOG A4B)	GTP-binding protein ATGB3	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	7e-3	42	Glycine max	GmaAffx.54679.1.S1_at	BI785597	-	-	9e-7	At1g67300	hexose transporter, putative	C.G.	S.X.	Please select
0.14	2e-44	180	Oryza sativa	Os02g0274900	AK073967.1	-	General substrate transporter family protein	2e-14	At1g79820	SGB1 (SUPPRESSOR OF G PROTEIN BETA1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e-1	38	Populus trichocarpa	PtpAffx.128113.1.A1_at	CV230743	-	-	9e-3	At3g66656	AGL91	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.42	8e-107	387	Triticum aestivum	Ta.5718.1.S1_at	CA743305	-	-	4e-6	At1g67300	hexose transporter, putative	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1614892_at	CF511230	-	-	1e+0	At5g29000	myb family transcription factor	C.G.	S.X.	Please select
0.14	2e-12	71	Zea mays	Zm.7545.1.A1_at	CO521231	metabolite transport protein csbC	-	6e+0	At4g39610	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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