Gene omics information

Query gene ID Contig10484_at
Gene name
Organism Hordeum vulgare


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.9198.1Contig10484_atContig10484--6e-10At3g24650ABI3 (ABA INSENSITIVE 3)S.X.H.G.
0.6077.3HV_CEb0001H12r2_atHV_CEb0001H12r2--4e+0At5g16740amino acid transporter family proteinS.X.H.G.
0.4661.0Contig19483_atContig19483--8e-39At1g07170-S.X.H.G.
0.4661.0Contig13318_atContig13318--1e-2At3g59010pectinesterase family proteinS.X.H.G.
0.4458.9Contig657_s_atContig657--1e-49At1g09200histone H3S.X.H.G.
0.4458.9Contig23603_atContig23603--8e-2At5g40870AtUK/UPRT1 (Uridine kinase/Uracil phosphoribosyltransferase 1)S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
42.599.9GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grains
28.799.9GSM238429Embryo 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grains
20.599.7GSM238422Endosperm 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grains
20.199.7GSM282041Control_dryseed_Morex_rep2GSE11200Expression data from malting barley seeds
17.299.6GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grains
15.899.6GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grains
14.499.5GSM238431Embryo 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grains
14.199.5GSM215730Control (DMSO) treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signaling
13.899.5GSM213436Barley seeds with P. aeruginosa PAO1 for 12hrGSE8618P. aeruginosa virulent factor to barley
13.199.4GSM213443Barley seeds with P. aeruginosa PA5021 mutant for 12hrGSE8618P. aeruginosa virulent factor to barley
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.037e-548Contig23185_atContig23185--3e-2At3g26790FUS3 (FUSCA 3)C.G.S.X.
0.042e-240Contig10926_atContig10926--3e-6At3g26790FUS3 (FUSCA 3)C.G.S.X.
0.026e-238Contig16196_atContig16196--2e-2At4g20470unknown proteinC.G.S.X.
0.016e-238Contig3114_atContig3114--5e-18At5g46110APE2 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2)C.G.S.X.
0.022e-136Contig6878_atContig6878--8e+0At1g14180protein binding / zinc ion bindingC.G.S.X.
0.032e-136HVSMEf0001F04r2_s_atHVSMEf0001F04r2--3e+0At1g54830NF-YC3 (NUCLEAR FACTOR Y, SUBUNIT C3)C.G.S.X.
0.022e-136Contig15718_atContig15718--2e+0At3g17609HYH (HY5-HOMOLOG)C.G.S.X.
0.022e-136Contig11265_atContig11265--2e+0At1g02510TPK4C.G.S.X.
0.021e+034EBro02_SQ005_L23_atEBro02_SQ005_L23--1e-3At3g49470NACA2 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 2)C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.076e-1065Arabidopsis thalianaAt3g24650822061ABI3 (ABA INSENSITIVE 3)Homologous to the maize transcription factor Viviparous-1. Full length ABI3 protein binds to the highly conserved RY motif [DNA motif CATGCA(TG)], present in many seed-specific promoters, and the B3 domains of this transcription factor is necessary for the specific interaction with the RY element. Transcriptional activity of ABI3 requires the B3 DNA-binding domain and an activation domain. In addition to the known N-terminal-located activation domain, a second transcription activation domain was found in the B1 region of ABI3. ABI3 is essential for seed maturation. Regulator of the transition between embryo maturation and early seedling development. Putative seed-specific transcriptional activator. Mutants exhibit decreased responsiveness to ABA suggesting that ABI3 protein participates in the ABA perception/transduction cascade. Based on double mutant analyses, ABI3 interacts genetically with both FUS3 and LEC1 and is involved in controlling accumulation of chlorophyll and anthocyanins, sensitivity to abscisic acid, and expression of the members of the 12S storage protein gene family. In addition, both FUS3 and LEC1 regulate positively the abundance of the ABI3 protein in the seed.---C.G.S.X.
0.042e-138Glycine maxGmaAffx.73695.1.S1_atAW471773--6e-9At3g24650ABI3 (ABA INSENSITIVE 3)C.G.S.X.
0.207e-82305Oryza sativaOs01g0911700AK073805.1-Transcription activator VP1-rice9e-8At3g24650ABI3 (ABA INSENSITIVE 3)C.G.S.X.
0.032e-757Populus trichocarpaPtpAffx.144743.1.S1_atAJ003166.1hypothetical protein-1e-68At3g24650ABI3 (ABA INSENSITIVE 3)C.G.S.X.
0.450938Triticum aestivumTa.42.1.S1_atAB047554.1--5e-6At3g24650ABI3 (ABA INSENSITIVE 3)C.G.S.X.
0.022e+032Vitis vinifera1619879_s_atCB340231hypothetical protein LOC100259229-4e-32At1g32470glycine cleavage system H protein, mitochondrial, putativeC.G.S.X.
0.181e-110398Zea maysZm.24.1.S1_atM60214.1viviparous1-3e-17At3g24650ABI3 (ABA INSENSITIVE 3)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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