Gene omics information

Query gene ID	Contig10479_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.94	98.9	Contig10479_at	Contig10479	-	-	2e+0	At3g22820	allergen-related	S.X.	H.G.	Please select
0.50	66.9	Contig167_x_at	Contig167	-	-	2e-8	At1g08880	H2AXA	S.X.	H.G.	Please select
0.49	63.7	Contig11372_at	Contig11372	-	-	5e-7	At3g27100	-	S.X.	H.G.	Please select
0.41	53.9	Contig13788_at	Contig13788	-	-	3e+0	At3g18215	unknown protein	S.X.	H.G.	Please select
0.36	47.1	Contig14679_at	Contig14679	-	-	4e+0	At3g52720	ACA1 (ALPHA CARBONIC ANHYDRASE 1)	S.X.	H.G.	Please select
0.32	40.3	Contig14154_at	Contig14154	-	-	2e+0	At1g60320	Toll-Interleukin-Resistance (TIR) domain-containing protein	S.X.	H.G.	Please select
0.32	40.3	Contig228_s_at	Contig228	-	-	2e+0	At2g39805	integral membrane Yip1 family protein	S.X.	H.G.	Please select
0.30	37.0	Contig17958_at	Contig17958	-	-	2e+0	At5g40370	glutaredoxin, putative	S.X.	H.G.	Please select
0.29	35.5	Contig6896_s_at	Contig6896	-	-	1e+1	At5g51860	MADS-box protein (AGL72)	S.X.	H.G.	Please select
0.29	35.5	Contig4715_at	Contig4715	-	-	1e+0	At4g10810	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
21.0	99.7	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
20.0	99.7	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
13.5	99.5	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
11.0	99.2	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
10.7	99.2	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
10.3	99.1	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
9.8	99.1	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.2	98.7	GSM146362	Golden Promise Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
7.9	98.7	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
7.8	98.6	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.45	5e-123	440	Contig10478_s_at	Contig10478	-	-	4e+0	At5g05820	phosphate translocator-related	C.G.	S.X.	Please select
0.20	1e-46	186	HS07G10u_s_at	HS07G10u	-	-	2e+0	At1g54780	thylakoid lumen 18.3 kDa protein	C.G.	S.X.	Please select
0.03	1e-3	44	HVSMEb0010I05r2_at	HVSMEb0010I05r2	-	-	3e+0	At1g68905	-	C.G.	S.X.	Please select
0.02	2e-2	40	Contig5762_at	Contig5762	-	-	1e-11	At5g04430	BTR1L (BINDING TO TOMV RNA 1L (LONG FORM))	C.G.	S.X.	Please select
0.02	2e-2	40	HT01A10w_at	HT01A10w	-	-	5e+0	At1g45243	DC1 domain-containing protein	C.G.	S.X.	Please select
0.01	2e-2	40	Contig5264_at	Contig5264	-	-	8e-94	At5g20890	chaperonin, putative	C.G.	S.X.	Please select
0.01	7e-2	38	Contig7038_at	Contig7038	-	-	2e-8	At1g10280	unknown protein	C.G.	S.X.	Please select
0.01	7e-2	38	Contig4498_at	Contig4498	-	-	2e-1	At1g28290	AGP31 (arabinogalactan-protein 31)	C.G.	S.X.	Please select
0.01	7e-2	38	Contig12602_at	Contig12602	-	-	4e-6	At5g52820	WD-40 repeat family protein / notchless protein, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	34	Arabidopsis thaliana	At3g22820	821853	allergen-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	5e-2	40	Glycine max	GmaAffx.42177.1.S1_at	BQ134143	-	-	9e-1	At5g08315	-	C.G.	S.X.	Please select
0.03	2e-2	42	Oryza sativa	OsAffx.15413.1.S1_x_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	3e+0	34	Populus trichocarpa	PtpAffx.214911.1.S1_at	pmrna28828	hypothetical protein	-	1e+0	At1g32560	late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.69	0	636	Triticum aestivum	Ta.13926.1.S1_a_at	BQ744122	-	-	3e+0	At3g22820	allergen-related	C.G.	S.X.	Please select
0.02	7e-1	34	Vitis vinifera	1610902_at	BQ800284	-	-	2e+0	At4g19390	-	C.G.	S.X.	Please select
0.03	2e-1	36	Zea mays	Zm.15106.1.A1_at	AI065782	-	-	7e-1	At2g29360	tropinone reductase, putative / tropine dehydrogenase, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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