Gene omics information

Query gene ID	Contig10453_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig10453_at	Contig10453	-	-	9e-1	At5g19485	transferase	S.X.	H.G.	Please select
0.77	90.8	Contig5969_at	Contig5969	-	-	7e-4	At1g64970	G-TMT (GAMMA-TOCOPHEROL METHYLTRANSFERASE)	S.X.	H.G.	Please select
0.67	84.7	Contig4324_at	Contig4324	-	-	8e+0	At4g26060	unknown protein	S.X.	H.G.	Please select
0.67	84.7	Contig13318_at	Contig13318	-	-	1e-2	At3g59010	pectinesterase family protein	S.X.	H.G.	Please select
0.60	77.3	Contig5966_at	Contig5966	-	-	9e-2	At4g33360	terpene cyclase/mutase-related	S.X.	H.G.	Please select
0.50	66.9	Contig11946_at	Contig11946	-	-	2e+0	At1g49950	DNA-binding protein, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
55.0	100.0	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
47.9	99.9	GSM238419	Endosperm 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
34.1	99.9	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
24.9	99.8	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
10.9	99.2	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
9.3	99.0	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
8.8	98.9	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
8.0	98.7	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
8.0	98.7	GSM440976	Control seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
7.7	98.6	GSM440979	Stressed seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.45	6e-173	607	Contig11021_at	Contig11021	-	-	3e+0	At4g22700	LBD32 (LOB DOMAIN-CONTAINING PROTEIN 32)	C.G.	S.X.	Please select
0.30	2e-170	599	HVSMEi0003A10r2_s_at	HVSMEi0003A10r2	-	-	4e-2	At4g14750	IQD19 (IQ-domain 19)	C.G.	S.X.	Please select
0.34	2e-80	299	Contig17737_at	Contig17737	-	-	2e+0	At3g51636	unknown protein	C.G.	S.X.	Please select
0.01	1e-1	38	Contig8417_at	Contig8417	-	-	6e-51	At4g14240	-	C.G.	S.X.	Please select
0.02	1e-1	38	HY06G13u_at	HY06G13u	-	-	1e+1	At5g48700	ubiquitin-related	C.G.	S.X.	Please select
0.01	5e-1	36	Contig17838_at	Contig17838	-	-	5e-1	At4g01895	systemic acquired resistance (SAR) regulator protein NIMIN-1-related	C.G.	S.X.	Please select
0.01	5e-1	36	Contig12580_at	Contig12580	-	-	1e+0	At5g28640	AN3 (ANGUSTIFOLIA 3)	C.G.	S.X.	Please select
0.02	5e-1	36	HVSMEn0022J09r2_at	HVSMEn0022J09r2	-	-	2e-1	At3g55070	-	C.G.	S.X.	Please select
0.01	5e-1	36	Contig21304_s_at	Contig21304	-	-	3e+0	At5g10390	histone H3	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	9e-1	36	Arabidopsis thaliana	At5g19485	3770677	transferase	F:transferase activity;P:biological_process unknown;C:endomembrane system;BOMFAP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	2e-2	42	Glycine max	GmaAffx.74681.1.S1_at	BU550733	-	-	4e-1	At1g26140	unknown protein	C.G.	S.X.	Please select
0.34	6e-25	117	Oryza sativa	Os02g0121700	AK110925.1	-	Terpene synthase-like domain containing protein	2e-2	At1g61680	TPS14 (TERPENE SYNTHASE 14)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.01	3e-1	38	Populus trichocarpa	Ptp.7073.2.S1_at	BU836555	hypothetical protein	-	8e-2	At1g68300	universal stress protein (USP) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.22	2e-51	204	Triticum aestivum	TaAffx.109854.1.S1_at	CA667998	-	-	4e+0	At4g29850	unknown protein	C.G.	S.X.	Please select
0.02	7e-2	38	Vitis vinifera	1617751_s_at	CA813831	hypothetical protein LOC100243312	-	8e-1	At2g22980	serine-type carboxypeptidase	C.G.	S.X.	Please select
0.01	4e-1	36	Zea mays	Zm.9441.1.A1_at	AY105453.1	hypothetical protein LOC100278105	-	1e+0	At2g33790	AGP30 (ARABINOGALACTAN PROTEIN30)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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