CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig10432_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 94.0 Contig10432_at Contig10432 - - 2e-29 At3g60750 transketolase, putative S.X. H.G.
0.60 77.3 Contig8658_at Contig8658 - - 1e-1 At5g46890 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein S.X. H.G.
0.44 58.9 Contig9944_s_at Contig9944 - - 4e+0 At2g36890 RAX2 (REGULATOR OF AXILLARY MERISTEMS 2) S.X. H.G.
0.44 58.9 Contig10300_at Contig10300 - - 4e-2 At4g21740 unknown protein S.X. H.G.
0.26 30.4 HV_CEa0014J08r2_at HV_CEa0014J08r2 - - 4e+0 At5g49050 - S.X. H.G.
0.17 16.9 Contig4745_at Contig4745 - - 2e+0 At5g37520 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
23.7 99.8 GSM282038 Malting_kilned_Morex_rep1 GSE11200 Expression data from malting barley seeds
22.9 99.8 GSM238431 Embryo 25DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
20.3 99.7 GSM238430 Embryo 25DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
20.1 99.7 GSM282035 Malting_day4_Morex_rep1 GSE11200 Expression data from malting barley seeds
18.9 99.7 GSM282032 Malting_day1_Morex_rep1 GSE11200 Expression data from malting barley seeds
16.4 99.6 GSM282041 Control_dryseed_Morex_rep2 GSE11200 Expression data from malting barley seeds
15.6 99.6 GSM71140 OWB-D stress replicate 2 GSE3170 Barley single feature polymorphisms and drought stress gene expression
14.4 99.5 GSM238434 Embryo 24 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
14.3 99.5 GSM238432 Embryo 0 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
14.3 99.5 GSM282040 Malting_kilned_Morex_rep2 GSE11200 Expression data from malting barley seeds
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.20 1e-38 161 Contig1618_at Contig1618 - - 1e-64 At3g60750 transketolase, putative C.G. S.X.
0.02 4e-4 46 Contig4210_at Contig4210 - - 1e+0 At1g14160 integral membrane family protein C.G. S.X.
0.02 4e-4 46 Contig14534_at Contig14534 - - 7e-1 At1g64930 CYP89A7 C.G. S.X.
0.02 4e-4 46 Contig11391_at Contig11391 - - 8e+0 At5g59030 COPT1 (copper transporter 1) C.G. S.X.
0.02 2e-3 44 HV14K06u_x_at HV14K06u - - 3e-3 At5g56750 Ndr family protein C.G. S.X.
0.02 2e-3 44 Contig6814_at Contig6814 - - 7e-9 At5g59140 SKP1 family protein C.G. S.X.
0.03 2e-3 44 HV_CEa0008C11r2_at HV_CEa0008C11r2 - - 8e-1 At1g56580 unknown protein C.G. S.X.
0.02 2e-3 44 Contig3685_at Contig3685 - - 8e+0 At5g18970 AWPM-19-like membrane family protein C.G. S.X.
0.02 2e-3 44 Contig14078_at Contig14078 - - 2e-21 At4g01800 preprotein translocase secA subunit, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.25 2e-29 131 Arabidopsis thaliana At3g60750 825246 transketolase, putative F:catalytic activity, transketolase activity;P:response to cadmium ion, response to salt stress;C:chloroplast stroma, chloroplast, chloroplast envelope;OBMFAP - - - C.G. S.X.
0.17 9e-17 89 Glycine max Gma.9720.1.S1_at CD413624 - - 5e-173 At3g60750 transketolase, putative C.G. S.X.
0.55 0 684 Oryza sativa Os04g0266900 AK069447.1 - Bacterial transketolase family protein 4e-19 At2g45290 transketolase, putative C.G. S.X.
0.22 3e-29 131 Populus trichocarpa PtpAffx.211461.1.S1_at pmrna22464 hypothetical protein - 8e-156 At2g45290 transketolase, putative C.G. S.X.
0.63 0 1293 Triticum aestivum Ta.5904.2.S1_at BJ293768 - - 1e-13 At3g60750 transketolase, putative C.G. S.X.
0.24 4e-37 155 Vitis vinifera 1613595_at BQ799166 hypothetical protein LOC100248004 - 5e-139 At2g45290 transketolase, putative C.G. S.X.
0.21 2e-37 157 Zea mays Zm.1422.1.A1_at CA402968 hypothetical protein LOC100279513 - 1e-59 At2g45290 transketolase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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