CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig10431_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.63 80.3 Contig10431_at Contig10431 - - 1e+0 At3g11530 vacuolar protein sorting 55 family protein / VPS55 family protein S.X. H.G.
0.37 47.9 Contig5913_s_at Contig5913 - - 4e+0 At4g21780 unknown protein S.X. H.G.
0.29 35.5 HX08J20r_s_at HX08J20r - - 2e+0 At4g15920 - S.X. H.G.
0.25 28.9 Contig7030_at Contig7030 - - 9e-1 At1g15740 leucine-rich repeat family protein S.X. H.G.
0.20 21.1 Contig10110_s_at Contig10110 - - 4e-4 At4g29870 - S.X. H.G.
0.14 12.9 Contig6761_at Contig6761 - - 6e-11 At3g43790 ZIFL2 (ZINC INDUCED FACILITATOR-like 2) S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
8.3 98.8 GSM261073 Albina f-17 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.7 97.7 GSM261072 Albina f-17 Hardened rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.2 97.4 GSM261071 Albina f-17 Hardened rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.7 96.9 GSM261053 Bonus Hardened rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.7 96.9 GSM261067 Xantha s-46 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.7 96.9 GSM261055 Bonus Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.6 96.8 GSM261079 Albina e-16 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.2 96.3 GSM261077 Albina e-16 Hardened rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.0 96.0 GSM261054 Bonus Hardened rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.8 95.7 GSM261066 Xantha s-46 Hardened rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 3e-9 61 Contig14029_at Contig14029 - - 2e-6 At5g57360 ZTL (ZEITLUPE) C.G. S.X.
0.03 4e-2 38 Contig10698_at Contig10698 - - 1e-17 At5g23410 - C.G. S.X.
0.01 2e-1 36 Contig7197_at Contig7197 - - 5e-15 At3g45810 ferric reductase-like transmembrane component family protein C.G. S.X.
0.02 3e+0 32 Contig9099_at Contig9099 - - 3e-3 At4g26080 ABI1 (ABA INSENSITIVE 1) C.G. S.X.
0.01 3e+0 32 Contig12622_at Contig12622 - - 3e-10 At5g20410 MGD2 C.G. S.X.
0.03 3e+0 32 HT02B01r_at HT02B01r - - 7e-2 At3g29010 catalytic C.G. S.X.
0.03 3e+0 32 HV_CEb0007F22r2_at HV_CEb0007F22r2 - - 3e+0 At3g42140 nucleic acid binding / zinc ion binding C.G. S.X.
0.01 3e+0 32 Contig11591_at Contig11591 - - 5e-27 At1g72040 deoxynucleoside kinase family C.G. S.X.
0.01 3e+0 32 Contig8839_at Contig8839 - - 8e-2 At3g23280 zinc finger (C3HC4-type RING finger) family protein / ankyrin repeat family protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e+0 34 Arabidopsis thaliana At3g11530 820326 vacuolar protein sorting 55 family protein / VPS55 family protein F:transporter activity;P:transport;C:vacuole;FMPO - - - C.G. S.X.
0.04 3e-2 40 Glycine max Gma.17126.1.A1_at BE659183 - - 2e-1 At5g60800 heavy-metal-associated domain-containing protein C.G. S.X.
0.07 5e-17 89 Oryza sativa Os02g0150800 BX901712 - Cyclin-like F-box domain containing protein 8e-1 At1g32470 glycine cleavage system H protein, mitochondrial, putative C.G. S.X.
0.02 2e+0 34 Populus trichocarpa PtpAffx.162759.1.S1_s_at BP927892 hypothetical protein - 2e+0 At5g59510 RTFL5 (ROTUNDIFOLIA LIKE 5) C.G. S.X.
0.42 3e-51 202 Triticum aestivum Ta.18914.1.A1_a_at CD875211 - - 2e-1 At2g18915 LKP2 (LOV KELCH PROTEIN 2) C.G. S.X.
0.07 7e-3 40 Vitis vinifera 1613547_at CB341494 - - 2e-9 At5g57360 ZTL (ZEITLUPE) C.G. S.X.
0.02 4e-2 38 Zea mays Zm.11333.1.A1_at AY108490.1 proline-rich cell wall protein-like - 2e-4 At5g37200 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage