Gene omics information

Query gene ID	Contig10417_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	80.3	Contig10417_at	Contig10417	-	-	2e-16	At4g21860	MSRB2 (methionine sulfoxide reductase B 2)	S.X.	H.G.	Please select
0.80	92.5	Contig19674_at	Contig19674	-	-	9e-2	At3g25600	calcium ion binding	S.X.	H.G.	Please select
0.73	88.7	Contig20672_x_at	Contig20672	-	-	5e+0	At5g54430	universal stress protein (USP) family protein	S.X.	H.G.	Please select
0.57	74.9	Contig10380_at	Contig10380	-	-	4e-1	At1g17880	nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative	S.X.	H.G.	Please select
0.39	50.5	HW07B05u_at	HW07B05u	-	-	1e+0	At3g22820	allergen-related	S.X.	H.G.	Please select
0.25	28.9	Contig5756_at	Contig5756	-	-	2e-12	At2g29530	mitochondrial import inner membrane translocase (TIM10)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.0	98.4	GSM261032	Dicktoo control-rep3	GSE10329	Low temperature stress in cv. Dicktoo
6.9	98.3	GSM281747	Genotype: Steptoe - rep3	GSE11182	Steptoe x Morex seedling leaf comparison
5.9	97.9	GSM281745	Genotype: Steptoe - rep1	GSE11182	Steptoe x Morex seedling leaf comparison
5.7	97.7	GSM160815	drought control rep3	GSE6990	Barley drought stress
5.7	97.7	GSM281746	Genotype: Steptoe - rep2	GSE11182	Steptoe x Morex seedling leaf comparison
5.6	97.7	GSM160744	drought control rep2	GSE6990	Barley drought stress
5.3	97.4	GSM372956	genotype: Mla6 - pathogen isolates: K1 - time: 0 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.9	97.1	GSM261033	Dicktoo-chilling-rep1	GSE10329	Low temperature stress in cv. Dicktoo
4.8	97.0	GSM261030	Dicktoo-control-rep1	GSE10329	Low temperature stress in cv. Dicktoo
4.3	96.4	GSM372958	genotype: Mla6 - pathogen isolates: K1 - time: 0 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.30	9e-32	137	Contig7035_at	Contig7035	-	-	2e-9	At4g21860	MSRB2 (methionine sulfoxide reductase B 2)	C.G.	S.X.	Please select
0.02	9e-1	34	Contig17740_at	Contig17740	-	-	2e+0	At1g15840	unknown protein	C.G.	S.X.	Please select
0.01	9e-1	34	Contig5723_at	Contig5723	-	-	5e-3	At3g15170	CUC1 (CUP-SHAPED COTYLEDON1)	C.G.	S.X.	Please select
0.02	9e-1	34	Contig14199_at	Contig14199	-	-	8e-6	At3g53450	unknown protein	C.G.	S.X.	Please select
0.02	9e-1	34	Contig4296_at	Contig4296	-	-	5e-38	At1g21720	PBC1 (PROTEASOME BETA SUBUNIT C1)	C.G.	S.X.	Please select
0.01	9e-1	34	Contig11892_at	Contig11892	-	-	2e-10	At2g26930	ATCDPMEK (4-(CYTIDINE 5'-PHOSPHO)-2-C-METHYL-D-ERITHRITOL KINASE)	C.G.	S.X.	Please select
0.02	9e-1	34	Contig2535_s_at	Contig2535	-	-	3e-1	At5g54160	ATOMT1 (O-METHYLTRANSFERASE 1)	C.G.	S.X.	Please select
0.02	9e-1	34	HU05C11u_at	HU05C11u	-	-	2e-2	At4g38410	dehydrin, putative	C.G.	S.X.	Please select
0.02	9e-1	34	Contig7787_at	Contig7787	-	-	2e+0	At4g21920	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.14	2e-16	87	Arabidopsis thaliana	At4g21860	828274	MSRB2 (methionine sulfoxide reductase B 2)	F:peptide-methionine-(S)-S-oxide reductase activity;P:biological_process unknown;C:chloroplast, chloroplast stroma;OBMPFAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.08	3e-12	73	Glycine max	Gma.4311.1.S1_at	CD410181	-	-	7e-3	At4g04830	methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein	C.G.	S.X.	Please select
0.39	4e-111	402	Oryza sativa	Os05g0404200	AK071730.1	-	Methionine sulfoxide reductase B domain containingprotein	2e-18	At4g21860	MSRB2 (methionine sulfoxide reductase B 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.09	2e-1	38	Populus trichocarpa	PtpAffx.17925.1.S1_at	AJ767519	methionine sulfoxide reductase type	-	8e-15	At4g21860	MSRB2 (methionine sulfoxide reductase B 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.69	0	761	Triticum aestivum	Ta.22791.1.S1_at	CD452557	-	-	2e-13	At4g21860	MSRB2 (methionine sulfoxide reductase B 2)	C.G.	S.X.	Please select
0.16	7e-13	73	Vitis vinifera	1619200_at	CB005350	hypothetical protein LOC100264443	-	3e-17	At4g21860	MSRB2 (methionine sulfoxide reductase B 2)	C.G.	S.X.	Please select
0.15	4e-12	71	Zea mays	Zm.17807.1.S1_at	CK371584	-	-	9e-2	At4g21860	MSRB2 (methionine sulfoxide reductase B 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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