Gene omics information

Query gene ID	Contig10395_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.88	95.2	Contig10395_at	Contig10395	-	-	3e-1	At2g36300	integral membrane Yip1 family protein	S.X.	H.G.	Please select
0.48	63.2	Contig13286_at	Contig13286	-	-	2e+1	At5g10620	-	S.X.	H.G.	Please select
0.40	53.1	Contig16774_at	Contig16774	-	-	1e+0	At4g34215	hydrolase	S.X.	H.G.	Please select
0.36	47.1	Contig15862_s_at	Contig15862	-	-	7e-1	At1g69580	transcription factor	S.X.	H.G.	Please select
0.33	42.6	HV05A08u_x_at	HV05A08u	UDP-D-glucuronate decarboxylase	-	2e+1	At5g44560	VPS2.2	S.X.	H.G.	Please select
0.32	40.3	Contig18440_at	Contig18440	-	-	2e+0	At3g56590	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select
0.30	37.0	Contig13404_at	Contig13404	-	-	2e+0	At1g76750	unknown protein	S.X.	H.G.	Please select
0.29	35.5	Contig12224_at	Contig12224	-	-	4e-8	At1g22200	unknown protein	S.X.	H.G.	Please select
0.21	22.6	Contig11367_s_at	Contig11367	-	-	3e-4	At4g21450	vesicle-associated membrane family protein / VAMP family protein	S.X.	H.G.	Please select
0.20	21.1	Contig26429_at	Contig26429	-	-	5e+0	At3g52790	peptidoglycan-binding LysM domain-containing protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.4	99.3	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
9.1	98.9	GSM372990	genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
7.7	98.6	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
7.6	98.6	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.4	98.5	GSM282026	Malting_day1_Legacy_rep4	GSE11200	Expression data from malting barley seeds
6.8	98.3	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.6	98.2	GSM282029	Malting_day1_Merit_rep3	GSE11200	Expression data from malting barley seeds
5.7	97.7	GSM282028	Malting_day1_Merit_rep1	GSE11200	Expression data from malting barley seeds
4.8	97.0	GSM372989	genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.4	96.6	GSM372995	genotype: 11542 - pathogen isolates: K1 - time: 8 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	4e-2	38	Contig9031_at	Contig9031	-	-	2e-4	At5g18270	ANAC087	C.G.	S.X.	Please select
0.03	2e-1	36	Contig4489_s_at	Contig4489	-	-	3e+0	At2g29525	-	C.G.	S.X.	Please select
0.02	2e-1	36	Contig4486_at	Contig4486	-	-	4e-1	At5g16470	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select
0.03	2e-1	36	HV02C03u_at	HV02C03u	-	-	4e+0	At5g10580	unknown protein	C.G.	S.X.	Please select
0.03	2e-1	36	Contig4487_s_at	Contig4487	-	-	4e-1	At5g16470	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select
0.01	7e-1	34	Contig4970_at	Contig4970	-	-	1e-9	At5g20950	glycosyl hydrolase family 3 protein	C.G.	S.X.	Please select
0.02	7e-1	34	Contig3287_x_at	Contig3287	-	-	6e+0	At3g15780	unknown protein	C.G.	S.X.	Please select
0.03	7e-1	34	HZ40B21r_s_at	HZ40B21r	-	-	2e+0	At4g33460	ATNAP13	C.G.	S.X.	Please select
0.03	7e-1	34	Contig11410_at	Contig11410	-	-	4e-1	At5g47150	YDG/SRA domain-containing protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-1	36	Arabidopsis thaliana	At2g36300	818202	integral membrane Yip1 family protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MFOP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	5e-1	36	Glycine max	PsAffx.psHB019xD04f_at	PsAffx.psHB019xD04f	-	-	5e-2	At2g43460	60S ribosomal protein L38 (RPL38A)	C.G.	S.X.	Please select
0.26	2e-41	171	Oryza sativa	Os.4290.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.49968.1.A1_s_at	CV261880	hypothetical protein	-	4e+0	At5g28610	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	1e+0	34	Triticum aestivum	TaAffx.77673.1.S1_at	CA744401	-	-	1e+1	At5g13220	JAZ10 (JASMONATE-ZIM-DOMAIN PROTEIN 10)	C.G.	S.X.	Please select
0.04	4e-1	34	Vitis vinifera	1620213_at	CB981229	hypothetical protein LOC100252268	-	5e-1	At1g13600	AtbZIP58 (Arabidopsis thaliana basic leucine-zipper 58)	C.G.	S.X.	Please select
0.03	1e-1	36	Zea mays	Zm.5380.1.A1_at	AI621514	-	-	3e-1	At1g51090	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage