CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig10380_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.1 Contig10380_at Contig10380 - - 4e-1 At1g17880 nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative S.X. H.G.
0.71 87.1 Contig19674_at Contig19674 - - 9e-2 At3g25600 calcium ion binding S.X. H.G.
0.71 87.1 Contig10001_at Contig10001 - - 9e-6 At3g01410 RNase H domain-containing protein S.X. H.G.
0.67 84.7 Contig10383_at Contig10383 - - 6e-4 At2g22540 SVP (SHORT VEGETATIVE PHASE) S.X. H.G.
0.63 80.3 Contig20672_x_at Contig20672 - - 5e+0 At5g54430 universal stress protein (USP) family protein S.X. H.G.
0.61 78.7 Contig10382_s_at Contig10382 - - 6e-38 At5g45190 cyclin family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
12.0 99.3 GSM419976 Palea_Rep2 GSE16754 Comparative transcriptional profiling of organs of the barley spike
12.0 99.3 GSM440964 Control palea_Rep2 GSE17669 Gene expression in the barley spike during drought stress
11.4 99.3 GSM160464 drought control rep1 GSE6990 Barley drought stress
11.2 99.2 GSM261022 ABA-Control-rep2 GSE10328 ABA experiment
10.5 99.2 GSM261027 ABA-Late-rep1 GSE10328 ABA experiment
10.4 99.2 GSM419979 Awn_Rep2 GSE16754 Comparative transcriptional profiling of organs of the barley spike
10.4 99.2 GSM440970 Control awn_Rep2 GSE17669 Gene expression in the barley spike during drought stress
9.4 99.0 GSM160819 38% SWC rep1 GSE6990 Barley drought stress
9.0 98.9 GSM261028 ABA-Late-rep2 GSE10328 ABA experiment
8.8 98.9 GSM419973 Lemma_Rep2 GSE16754 Comparative transcriptional profiling of organs of the barley spike
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 0 1637 Contig10380_x_at Contig10380 - - 4e-1 At1g17880 nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative C.G. S.X.
0.36 3e-40 165 Contig6925_at Contig6925 - - 2e-3 At1g17620 - C.G. S.X.
0.11 1e-33 143 Contig10379_at Contig10379 - - 5e+0 At4g17483 palmitoyl protein thioesterase family protein C.G. S.X.
0.02 3e-3 42 Contig14879_at Contig14879 - - 2e+0 At4g11870 unknown protein C.G. S.X.
0.02 3e-3 42 Contig9907_at Contig9907 - - 4e-11 At1g07410 ATRABA2B (ARABIDOPSIS RAB GTPASE HOMOLOG A2B) C.G. S.X.
0.04 3e-3 42 Contig12545_at Contig12545 - - 1e-3 At3g27160 GHS1 (GLUCOSE HYPERSENSITIVE 1) C.G. S.X.
0.02 3e-3 42 Contig9907_s_at Contig9907 - - 4e-11 At1g07410 ATRABA2B (ARABIDOPSIS RAB GTPASE HOMOLOG A2B) C.G. S.X.
0.02 3e-3 42 Contig9906_at Contig9906 - - 4e-11 At1g07410 ATRABA2B (ARABIDOPSIS RAB GTPASE HOMOLOG A2B) C.G. S.X.
0.02 3e-3 42 Contig7759_at Contig7759 - - 2e-1 At5g21280 hydroxyproline-rich glycoprotein family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 4e-1 36 Arabidopsis thaliana At1g17880 838367 nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative F:transcription factor activity;P:response to salt stress;C:cellular_component unknown;MFPO - - - C.G. S.X.
0.06 2e-4 48 Glycine max Gma.4209.2.S1_at BQ611849 - - 6e-1 At1g70540 EDA24 (embryo sac development arrest 24) C.G. S.X.
0.68 0 696 Oryza sativa Os01g0195400 CF301352 - Harpin-induced 1 domain containing protein 6e-2 At5g18540 unknown protein C.G. S.X.
0.03 2e-3 44 Populus trichocarpa Ptp.1330.1.S1_at CK093724 hypothetical protein - 7e-3 At2g30520 RPT2 (ROOT PHOTOTROPISM 2) C.G. S.X.
0.65 0 1184 Triticum aestivum TaAffx.8264.1.S1_at BG908173 - - 7e-1 At1g17880 nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative C.G. S.X.
0.03 8e-3 40 Vitis vinifera 1615302_at CF414670 - - 7e-1 At3g44716 unknown protein C.G. S.X.
0.20 2e-22 105 Zea mays Zm.9903.1.A1_at BM335103 hypothetical protein LOC100273348 - 3e+0 At1g63220 C2 domain-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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