CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig10265_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.1 Contig10265_at Contig10265 - - 2e-7 At5g24340 3'-5' exonuclease domain-containing protein S.X. H.G.
0.67 84.7 Contig24660_at Contig24660 - - 6e+0 Atmg00680 - S.X. H.G.
0.67 84.7 Contig177_at Contig177 - - 3e-93 At5g17310 UTP--glucose-1-phosphate uridylyltransferase, putative / UDP-glucose pyrophosphorylase, putative / UGPase, putative S.X. H.G.
0.60 77.3 Contig16518_at Contig16518 - - 7e+0 Atmg00070 - S.X. H.G.
0.40 53.1 Contig15422_at Contig15422 - - 2e-1 At3g10585 myb family transcription factor / I-box binding factor-related protein S.X. H.G.
0.36 47.1 Contig19125_at Contig19125 - - 4e-3 At2g33980 atnudt22 (Arabidopsis thaliana Nudix hydrolase homolog 22) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
13.2 99.4 GSM238434 Embryo 24 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
9.9 99.1 GSM282041 Control_dryseed_Morex_rep2 GSE11200 Expression data from malting barley seeds
9.5 99.0 GSM238435 Embryo 24 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
8.9 98.9 GSM238425 Endosperm 48 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
8.8 98.9 GSM238424 Endosperm 48 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
7.2 98.5 GSM238426 Endosperm 72 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
7.1 98.4 GSM238433 Embryo 0 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
6.8 98.3 GSM282025 Control_dryseed_Morex_rep1 GSE11200 Expression data from malting barley seeds
6.6 98.2 GSM238436 Embryo 48 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
6.4 98.1 GSM238422 Endosperm 24 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 5e-3 42 HA16J16r_at HA16J16r - - 1e+0 At4g31840 plastocyanin-like domain-containing protein C.G. S.X.
0.01 3e-1 36 Contig6720_at Contig6720 - - 6e-1 At5g08150 unknown protein C.G. S.X.
0.01 3e-1 36 AB024007_at AB024007 - - 6e-1 At1g33800 unknown protein C.G. S.X.
0.02 3e-1 36 Contig2780_s_at Contig2780 - - 1e-4 At2g25940 ALPHA-VPE (alpha-vacuolar processing enzyme) C.G. S.X.
0.03 1e+0 34 rbags22e20_at rbags22e20 - - 2e+0 At1g43170 ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1) C.G. S.X.
0.02 1e+0 34 HV06O09u_at HV06O09u - - 1e+0 At1g60280 ANAC023 (Arabidopsis NAC domain containing protein 23) C.G. S.X.
0.01 1e+0 34 Contig22316_at Contig22316 - - 8e+0 At5g27940 WPP3 (WPP domain protein 3) C.G. S.X.
0.01 1e+0 34 Contig17578_at Contig17578 - - 6e-1 At3g61100 unknown protein C.G. S.X.
0.02 1e+0 34 HO03L07S_at HO03L07S - - 1e+0 At3g32050 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 2e-7 57 Arabidopsis thaliana At5g24340 832504 3'-5' exonuclease domain-containing protein F:3'-5' exonuclease activity, nucleic acid binding;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;C:intracellular;BOMFPA - - - C.G. S.X.
0.04 1e-2 42 Glycine max Gma.8145.1.A1_at AW310979 - - 3e-38 At5g24340 3'-5' exonuclease domain-containing protein C.G. S.X.
0.35 2e-91 337 Oryza sativa Os07g0452400 CA762394 - 3'-5' exonuclease domain containing protein 3e-10 At5g24340 3'-5' exonuclease domain-containing protein C.G. S.X.
0.03 9e-1 36 Populus trichocarpa Ptp.7900.1.S1_at DN500858 - - 3e+0 At5g62140 unknown protein C.G. S.X.
0.31 7e-121 434 Triticum aestivum Ta.4164.1.S1_at BT009452.1 - - 4e-6 At5g24340 3'-5' exonuclease domain-containing protein C.G. S.X.
0.02 7e-1 34 Vitis vinifera 1612065_at CB976356 - - 1e+0 At1g53815 F-box family protein C.G. S.X.
0.22 2e-30 133 Zea mays Zm.2602.1.S1_at AY109922.1 hypothetical protein LOC100217277 - 1e-2 At5g24340 3'-5' exonuclease domain-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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