Gene omics information

Query gene ID	Contig10231_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	Contig10231_at	Contig10231	-	-	2e-2	At5g12180	CPK17	S.X.	H.G.	Please select
0.29	35.5	Contig13917_at	Contig13917	-	-	2e-13	At5g63370	protein kinase family protein	S.X.	H.G.	Please select
0.21	22.6	HZ01D23u_s_at	HZ01D23u	-	-	4e+0	At1g05900	endonuclease-related	S.X.	H.G.	Please select
0.13	11.6	Contig18852_at	Contig18852	-	-	1e+0	At1g31630	AGL86 (AGAMOUS-LIKE 86)	S.X.	H.G.	Please select
0.11	9.4	Contig22076_at	Contig22076	-	-	1e+1	At5g64810	WRKY51	S.X.	H.G.	Please select
0.11	9.4	rbah61h03_x_at	rbah61h03	-	-	5e-61	At4g05050	UBQ11 (UBIQUITIN 11)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
201.4	100.0	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
156.3	100.0	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
22.7	99.8	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
10.6	99.2	GSM440967	Stressed palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
3.2	94.3	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
2.4	91.4	GSM440961	Stressed lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress
1.5	84.4	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
1.0	76.4	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
0.8	71.7	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
0.6	65.6	GSM440962	Stressed lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	3e-18	91	Contig4593_at	Contig4593	-	-	9e-10	At4g23650	CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)	C.G.	S.X.	Please select
0.04	2e-16	85	Contig4592_s_at	Contig4592	-	-	3e-22	At4g23650	CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)	C.G.	S.X.	Please select
0.08	3e-12	71	Contig15997_at	Contig15997	-	-	9e-22	At3g51850	CPK13	C.G.	S.X.	Please select
0.06	2e-10	65	Contig4589_at	Contig4589	-	-	6e-30	At2g17290	CPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)	C.G.	S.X.	Please select
0.03	2e-7	56	Contig5679_at	Contig5679	-	-	7e-42	At4g21940	CPK15	C.G.	S.X.	Please select
0.03	2e-7	56	Contig6447_at	Contig6447	-	-	4e-15	At1g35670	ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2)	C.G.	S.X.	Please select
0.02	4e-5	48	Contig11313_at	Contig11313	-	-	6e-8	At5g58380	SIP1 (SOS3-INTERACTING PROTEIN 1)	C.G.	S.X.	Please select
0.03	7e-4	44	Contig5191_at	Contig5191	-	-	1e-11	At4g35310	CPK5 (calmodulin-domain protein kinase 5)	C.G.	S.X.	Please select
0.02	3e-3	42	Contig7135_at	Contig7135	-	-	4e-31	At2g41860	CPK14	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	2e-2	40	Arabidopsis thaliana	At5g12180	831091	CPK17	member of Calcium Dependent Protein Kinase	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.08	3e-2	40	Glycine max	GmaAffx.90658.1.S1_at	CF806383	-	-	2e-18	At4g14580	CIPK4 (CBL-interacting protein kinase 4)	C.G.	S.X.	Please select
0.18	6e-72	272	Oryza sativa	Os01g0808400	AK112112.1	-	Calcium-dependent protein kinase (Fragment)	2e-8	At5g19360	CPK34	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	7e+0	32	Populus trichocarpa	PtpAffx.5407.1.A1_at	CV250365	-	-	2e-13	At1g52760	esterase/lipase/thioesterase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.27	1e-65	250	Triticum aestivum	Ta.23693.1.S1_at	BJ249564	-	-	6e-1	At1g15720	TRFL5 (TRF-LIKE 5)	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1612902_at	CB001774	-	-	2e+0	At3g12720	ATMYB67 (MYB DOMAIN PROTEIN 67)	C.G.	S.X.	Please select
0.15	2e-37	155	Zea mays	Zm.17082.1.S1_s_at	AY108221.1	-	-	4e-12	At4g23650	CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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