Gene omics information

Query gene ID	Contig10185_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig10185_at	Contig10185	-	-	8e-1	At3g54720	AMP1 (ALTERED MERISTEM PROGRAM 1)	S.X.	H.G.	Please select
0.50	66.9	Contig10315_at	Contig10315	-	-	1e+0	At4g24015	zinc finger (RING-H2 type) protein-related	S.X.	H.G.	Please select
0.35	45.1	Contig15006_at	Contig15006	-	-	5e+0	At5g38800	AtbZIP43 (Arabidopsis thaliana basic leucine-zipper 43)	S.X.	H.G.	Please select
0.33	42.6	Contig14081_at	Contig14081	-	-	1e-1	At1g22340	AtUGT85A7 (UDP-glucosyl transferase 85A7)	S.X.	H.G.	Please select
0.24	27.2	Contig8406_at	Contig8406	-	-	4e-2	At3g10040	transcription factor	S.X.	H.G.	Please select
0.16	15.3	Contig12720_at	Contig12720	-	-	7e+0	At5g38180	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
20.0	99.7	GSM398270	HS41-1_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
13.6	99.5	GSM398273	Moroc9-75_0d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
12.8	99.4	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
12.2	99.4	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
10.5	99.2	GSM398274	Moroc9-75_0d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
10.3	99.1	GSM398283	Moroc9-75_5d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
9.8	99.1	GSM440962	Stressed lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress
9.5	99.0	GSM398266	HS41-1_1d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
9.3	99.0	GSM398281	Moroc9-75_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
9.0	98.9	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e-4	46	Contig13378_at	Contig13378	-	-	6e+0	At4g38430	ROPGEF1	C.G.	S.X.	Please select
0.01	4e-1	36	Contig7775_at	Contig7775	beta3-glucuronyltransferase	-	3e+0	At5g42965	nucleic acid binding / ribonuclease H	C.G.	S.X.	Please select
0.02	4e-1	36	Contig14687_at	Contig14687	-	-	3e-1	At5g19980	integral membrane family protein	C.G.	S.X.	Please select
0.02	4e-1	36	Contig25138_at	Contig25138	-	-	3e+0	At1g19740	ATP-dependent protease La (LON) domain-containing protein	C.G.	S.X.	Please select
0.01	4e-1	36	Contig12483_at	Contig12483	-	-	2e-3	At3g57390	AGL18	C.G.	S.X.	Please select
0.02	2e+0	34	Contig11166_s_at	Contig11166	-	-	8e-2	At1g65000	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	34	Contig7690_at	Contig7690	-	-	2e-3	At1g64980	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	34	Contig11976_at	Contig11976	-	-	1e-2	At1g48912	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	34	Contig3054_at	Contig3054	-	-	3e-5	At4g28050	TET7 (TETRASPANIN7)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	8e-1	36	Arabidopsis thaliana	At3g54720	824637	AMP1 (ALTERED MERISTEM PROGRAM 1)	Encodes glutamate carboxypeptidase. Various alleles show-increased cotyledon number and rate of leaf initiation, show transformation of leaves to cotyledons, altered flowering time and photomorphogenesis and an increased level of cytokinin biosynthesis. Involved in ethylene enhanced hypocotyl elongation in the light. Strong genetic interaction between TGH and AMP1.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	1e+0	36	Glycine max	Gma.5374.1.S1_at	BM093818	-	-	4e-1	At3g63320	protein phosphatase 2C-related / PP2C-related	C.G.	S.X.	Please select
0.45	2e-160	567	Oryza sativa	OsAffx.23781.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	4e-3	44	Populus trichocarpa	PtpAffx.22300.1.S1_at	CF228629	hypothetical protein	-	5e-7	At5g19740	peptidase M28 family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.46	1e-82	307	Triticum aestivum	Ta.27515.1.S1_at	BT009189.1	-	-	2e-3	At5g19740	peptidase M28 family protein	C.G.	S.X.	Please select
0.03	2e-1	36	Vitis vinifera	1618640_at	CB912272	hypothetical protein LOC100263256	-	5e+0	Atcg01310	-	C.G.	S.X.	Please select
0.44	3e-75	282	Zea mays	Zm.10769.1.A1_at	CF624289	glutamate carboxypeptidase 2	-	2e+0	At2g18890	protein kinase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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