Gene omics information

Query gene ID	Contig10125_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.92	98.4	Contig10125_s_at	Contig10125	-	-	8e-2	At4g30067	LCR63 (Low-molecular-weight cysteine-rich 63)	S.X.	H.G.	Please select
0.38	49.5	HU05M05u_s_at	HU05M05u	-	-	1e+0	At5g18810	SCL28	S.X.	H.G.	Please select
0.06	4.8	Contig8429_at	Contig8429	-	-	5e-4	At4g30500	unknown protein	S.X.	H.G.	Please select
0.05	4.1	Contig865_3_s_at	Contig865_3	-	-	0			S.X.	H.G.	Please select
0.04	3.4	Contig585_x_at	Contig585	-	-	2e+0	At4g33450	MYB69 (MYB DOMAIN PROTEIN 69)	S.X.	H.G.	Please select
0.02	1.8	Contig8191_at	Contig8191	-	-	2e-3	At3g52960	peroxiredoxin type 2, putative	S.X.	H.G.	Please select
0.01	1.1	Contig7815_s_at	Contig7815	-	-	2e-5	At5g48930	HCT (HYDROXYCINNAMOYL-COA SHIKIMATE/QUINATE HYDROXYCINNAMOYL TRANSFERASE)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
21.1	99.7	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
15.7	99.6	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
13.7	99.5	GSM261063	Xantha s-46 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
12.7	99.4	GSM261058	Xantha b-12 Cotrol rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
11.7	99.3	GSM398272	HS41-1_5d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
11.2	99.2	GSM261075	Albina e-16 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
10.9	99.2	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
10.5	99.2	GSM261057	Xantha b-12 Cotrol rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
10.2	99.1	GSM261074	Albina e-16 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
9.7	99.0	GSM160744	drought control rep2	GSE6990	Barley drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.80	0	730	Contig10126_at	Contig10126	-	-	9e-2	At4g30067	LCR63 (Low-molecular-weight cysteine-rich 63)	C.G.	S.X.	Please select
0.21	4e-14	77	HY05A23u_at	HY05A23u	-	-	3e+0	At2g32960	tyrosine specific protein phosphatase family protein	C.G.	S.X.	Please select
0.06	3e-9	61	Contig18135_at	Contig18135	-	-	2e+0	At5g67300	MYBR1 (MYB DOMAIN PROTEIN R1)	C.G.	S.X.	Please select
0.11	1e-5	50	Contig23355_at	Contig23355	-	-	5e+0	At4g16380	metal ion binding	C.G.	S.X.	Please select
0.04	6e-4	44	Contig10900_at	Contig10900	-	-	3e-25	At1g73110	ribulose bisphosphate carboxylase/oxygenase activase, putative / RuBisCO activase, putative	C.G.	S.X.	Please select
0.03	4e-2	38	Contig5426_s_at	Contig5426	-	-	1e-1	At3g47160	protein binding / zinc ion binding	C.G.	S.X.	Please select
0.04	4e-2	38	Contig5424_at	Contig5424	-	-	6e-1	At1g80400	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.03	4e-2	38	Contig5426_at	Contig5426	-	-	1e-1	At3g47160	protein binding / zinc ion binding	C.G.	S.X.	Please select
0.01	2e-1	36	Contig9357_at	Contig9357	-	-	2e-42	At1g27770	ACA1 (AUTO-INHIBITED CA2+-ATPASE 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	8e-2	38	Arabidopsis thaliana	At4g30067	3770559	LCR63 (Low-molecular-weight cysteine-rich 63)	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e+0	34	Glycine max	Gma.2322.2.S1_at	BG726816	-	-	8e-1	At1g36980	unknown protein	C.G.	S.X.	Please select
0.04	2e-4	48	Oryza sativa	Os04g0658300	AK067399.1	-	AAA ATPase, central region domain containingprotein	1e-30	At1g73110	ribulose bisphosphate carboxylase/oxygenase activase, putative / RuBisCO activase, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	4e-1	36	Populus trichocarpa	PtpAffx.222767.1.S1_at	pmrna40406	hypothetical protein	-	8e-1	At3g22370	AOX1A (ALTERNATIVE OXIDASE 1A)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.36	8e-33	141	Triticum aestivum	TaAffx.46799.1.S1_at	CA675844	-	-	6e+0	At4g30067	LCR63 (Low-molecular-weight cysteine-rich 63)	C.G.	S.X.	Please select
0.04	9e-2	36	Vitis vinifera	1613214_at	CB340082	-	-	4e+0	At4g16015	DC1 domain-containing protein	C.G.	S.X.	Please select
0.03	2e+0	32	Zea mays	ZmAffx.1321.1.S1_at	40794996-33	-	-	7e-1	At1g05760	RTM1 (restricted tev movement 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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