Gene omics information

Query gene ID	Contig10118_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.81	92.8	Contig10118_at	Contig10118	-	-	1e-1	At1g53620	unknown protein	S.X.	H.G.	Please select
0.63	80.3	HT09B14u_s_at	HT09B14u	-	-	3e+0	At3g55580	regulator of chromosome condensation (RCC1) family protein	S.X.	H.G.	Please select
0.56	74.3	Contig14264_at	Contig14264	-	-	2e+0	At1g48780	unknown protein	S.X.	H.G.	Please select
0.53	69.7	Contig7911_at	Contig7911	-	-	2e-4	At4g28400	protein phosphatase 2C, putative / PP2C, putative	S.X.	H.G.	Please select
0.51	67.5	Contig20206_at	Contig20206	-	-	6e-3	At1g73010	phosphatase	S.X.	H.G.	Please select
0.51	67.5	Contig18744_at	Contig18744	-	-	2e+0	At5g41630	F-box family protein	S.X.	H.G.	Please select
0.49	63.7	rbags21n02_at	rbags21n02	-	-	3e-1	At2g46680	ATHB-7 (ARABIDOPSIS THALIANA HOMEOBOX 7)	S.X.	H.G.	Please select
0.46	61.0	Contig16455_at	Contig16455	-	-	1e-1	At3g46880	unknown protein	S.X.	H.G.	Please select
0.44	58.9	Contig26395_at	Contig26395	-	-	5e+0	At5g07460	PMSR2 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 2)	S.X.	H.G.	Please select
0.42	55.2	Contig25536_at	Contig25536	-	-	1e-1	At1g70120	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
15.2	99.5	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
14.0	99.5	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
12.6	99.4	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
9.9	99.1	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.0	98.4	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.9	98.3	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
6.4	98.1	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.3	98.1	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.2	98.0	GSM282026	Malting_day1_Legacy_rep4	GSE11200	Expression data from malting barley seeds
6.1	98.0	GSM282029	Malting_day1_Merit_rep3	GSE11200	Expression data from malting barley seeds

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-2	40	Contig6929_at	Contig6929	-	-	3e-19	At3g46920	protein kinase family protein	C.G.	S.X.	Please select
0.02	2e-2	40	Contig10040_at	Contig10040	-	-	7e-4	At2g47420	dimethyladenosine transferase, putative	C.G.	S.X.	Please select
0.02	2e-2	40	Contig1330_at	Contig1330	-	-	2e-95	At3g56800	CAM3 (CALMODULIN 3)	C.G.	S.X.	Please select
0.01	6e-2	38	Contig1390_3_s_at	Contig1390_3	actin	-	0	At5g09810	ACT7 (ACTIN 7)	C.G.	S.X.	Please select
0.01	6e-2	38	Contig1390_M_at	Contig1390_M	actin	-	0	At5g09810	ACT7 (ACTIN 7)	C.G.	S.X.	Please select
0.01	6e-2	38	Contig1390_5_at	Contig1390_5	-	-	0	At5g09810	ACT7 (ACTIN 7)	C.G.	S.X.	Please select
0.01	6e-2	38	Contig7701_at	Contig7701	-	-	6e-15	At3g07050	GTP-binding family protein	C.G.	S.X.	Please select
0.01	6e-2	38	Contig6894_at	Contig6894	-	-	2e-17	At3g57610	ADSS (ADENYLOSUCCINATE SYNTHASE)	C.G.	S.X.	Please select
0.02	6e-2	38	Contig3276_s_at	Contig3276	CesA2 protein	-	2e-2	At4g28890	protein binding / ubiquitin-protein ligase/ zinc ion binding	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e-1	38	Arabidopsis thaliana	At1g53620	841797	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBPOFV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	7e-1	36	Glycine max	HgAffx.12256.1.S1_at	CB375726	-	-	2e-1	At3g43520	unknown protein	C.G.	S.X.	Please select
0.32	1e-89	331	Oryza sativa	Os12g0541400	BQ907958	-	Hypothetical protein	3e+0	At5g01300	phosphatidylethanolamine-binding family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e-1	38	Populus trichocarpa	PtpAffx.222163.1.S1_at	pmrna39407	hypothetical protein	-	4e-1	At3g14230	RAP2.2	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.46	2e-130	466	Triticum aestivum	TaAffx.128600.1.A1_s_at	CD492157	-	-	5e+0	At1g52390	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	36	Vitis vinifera	1613577_at	CB975267	-	-	3e-1	At1g07980	NF-YC10 (NUCLEAR FACTOR Y, SUBUNIT C10)	C.G.	S.X.	Please select
0.28	5e-64	244	Zea mays	Zm.9277.1.S1_at	AY105731.1	hypothetical protein LOC100193622	-	1e-1	At2g25820	transcription factor	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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