Gene omics information

Query gene ID	Contig10115_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	Contig10115_at	Contig10115	-	-	7e-1	At5g48220	indole-3-glycerol phosphate synthase, putative	S.X.	H.G.	Please select
0.43	56.4	Contig5897_at	Contig5897	-	-	6e-1	At5g27810	sequence-specific DNA binding / transcription factor	S.X.	H.G.	Please select
0.33	42.6	Contig9589_at	Contig9589	-	-	2e+0	At4g19270	unknown protein	S.X.	H.G.	Please select
0.33	42.6	Contig21026_at	Contig21026	-	-	2e+0	At2g30870	GSTF10 (HALIANA GLUTATHIONE S-TRANSFERASE PHI 10)	S.X.	H.G.	Please select
0.32	40.3	Contig6857_at	Contig6857	-	-	2e-3	At4g14305	-	S.X.	H.G.	Please select
0.31	38.6	Contig21277_at	Contig21277	-	-	8e-12	At1g26850	dehydration-responsive family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
44.6	99.9	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
43.3	99.9	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
41.2	99.9	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
26.8	99.8	GSM372984	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
23.9	99.8	GSM372982	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
23.8	99.8	GSM372985	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
22.0	99.8	GSM372981	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
16.2	99.6	GSM372945	genotype: Mla6 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
12.9	99.4	GSM372988	genotype: 11542 - pathogen isolates: 5874 - time: 24 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
10.9	99.2	GSM372991	genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.38	2e-36	153	Contig6407_at	Contig6407	-	-	8e-6	At5g48220	indole-3-glycerol phosphate synthase, putative	C.G.	S.X.	Please select
0.38	2e-36	153	Contig6407_s_at	Contig6407	-	-	8e-6	At5g48220	indole-3-glycerol phosphate synthase, putative	C.G.	S.X.	Please select
0.22	2e-33	143	Contig6406_at	Contig6406	-	-	7e-6	At5g48220	indole-3-glycerol phosphate synthase, putative	C.G.	S.X.	Please select
0.08	7e-21	101	Contig7793_at	Contig7793	-	-	2e-2	At4g24590	unknown protein	C.G.	S.X.	Please select
0.04	1e-16	87	Contig11648_at	Contig11648	-	-	5e-13	At5g04360	ATLDA (LIMIT DEXTRINASE)	C.G.	S.X.	Please select
0.04	2e-15	83	Contig9424_at	Contig9424	-	-	1e-6	At3g15290	3-hydroxybutyryl-CoA dehydrogenase, putative	C.G.	S.X.	Please select
0.09	3e-11	69	HT11F05u_at	HT11F05u	-	-	3e-1	At1g62760	invertase/pectin methylesterase inhibitor family protein	C.G.	S.X.	Please select
0.06	3e-11	69	Contig13952_at	Contig13952	-	-	2e+0	At3g56910	PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5)	C.G.	S.X.	Please select
0.13	1e-10	67	Contig8883_at	Contig8883	-	-	5e-5	At2g04400	indole-3-glycerol phosphate synthase (IGPS)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	7e-1	36	Arabidopsis thaliana	At5g48220	834875	indole-3-glycerol phosphate synthase, putative	F:indole-3-glycerol-phosphate synthase activity, catalytic activity;P:metabolic process, tryptophan metabolic process;C:chloroplast, chloroplast stroma;BOAFP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.10	3e-1	38	Glycine max	Gma.11183.2.A1_at	CD394687	-	-	3e-24	At2g04400	indole-3-glycerol phosphate synthase (IGPS)	C.G.	S.X.	Please select
0.58	0	728	Oryza sativa	Os09g0255400	AK071383.1	-	Indole-3-glycerol phosphate synthase, chloroplastprecursor (EC 4.1.1.48) (IGPS)	7e-1	At2g04400	indole-3-glycerol phosphate synthase (IGPS)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e-5	52	Populus trichocarpa	PtpAffx.41412.1.A1_at	CV235298	hypothetical protein	-	3e-51	At5g48220	indole-3-glycerol phosphate synthase, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.61	0	1158	Triticum aestivum	Ta.4200.1.A1_at	BJ266589	-	-	4e-1	At2g04400	indole-3-glycerol phosphate synthase (IGPS)	C.G.	S.X.	Please select
0.02	4e+0	32	Vitis vinifera	1613353_at	CA809236	hypothetical protein LOC100265492	-	4e-86	At4g01370	ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4)	C.G.	S.X.	Please select
0.28	1e-62	240	Zea mays	Zm.5187.1.A1_at	AY104276.1	hypothetical protein LOC100272983	-	2e-4	At2g04400	indole-3-glycerol phosphate synthase (IGPS)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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