CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig10043_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 84.7 Contig10043_at Contig10043 - - 8e-38 At5g13280 AK-LYS1 (ASPARTATE KINASE 1) S.X. H.G.
0.46 61.0 Contig22791_at Contig22791 - - 6e-4 At3g01650 RGLG1 (RING domain Ligase1) S.X. H.G.
0.44 58.9 Contig10812_at Contig10812 - - 2e+0 At1g54410 dehydrin family protein S.X. H.G.
0.33 42.6 Contig9520_at Contig9520 - - 4e-4 At5g46160 ribosomal protein L14 family protein / huellenlos paralog (HLP) S.X. H.G.
0.23 26.1 HVSMEc0019C19f_at HVSMEc0019C19f - - 0 Atcg00020 - S.X. H.G.
0.13 11.6 Contig5117_at Contig5117 - - 8e-2 At5g60500 undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
16.2 99.6 GSM261055 Bonus Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
9.1 98.9 GSM213443 Barley seeds with P. aeruginosa PA5021 mutant for 12hr GSE8618 P. aeruginosa virulent factor to barley
8.8 98.9 GSM213436 Barley seeds with P. aeruginosa PAO1 for 12hr GSE8618 P. aeruginosa virulent factor to barley
5.6 97.7 GSM161200 cold treatment rep1 GSE6993 Barley low temperature stress
5.5 97.6 GSM261045 after 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.2 97.4 GSM238435 Embryo 24 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
5.0 97.2 GSM68901 27 h control replicate 1 GSE3097 Barley1 salinity stress study
4.7 96.9 GSM161221 cold treatment rep3 GSE6993 Barley low temperature stress
4.5 96.7 GSM213441 Barley seeds control in Hoagland solution for 12hr GSE8618 P. aeruginosa virulent factor to barley
4.4 96.6 GSM372947 genotype: Mla6 - pathogen isolates: 5874 - time: 20 - rep1 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 1e-10 67 HVSMEf0021O19r2_s_at HVSMEf0021O19r2 - - 5e-6 At3g02020 AK3 (ASPARTATE KINASE 3) C.G. S.X.
0.02 2e-6 54 Contig3187_s_at Contig3187 - - 1e+0 At1g31410 putrescine-binding periplasmic protein-related C.G. S.X.
0.01 7e-6 52 Contig7560_at Contig7560 - - 5e-53 At2g39930 ISA1 (ISOAMYLASE 1) C.G. S.X.
0.02 7e-6 52 Contig23563_at Contig23563 - - 2e+0 At2g23930 SNRNP-G (PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEIN G) C.G. S.X.
0.02 3e-5 50 Contig9052_at Contig9052 - - 1e-4 At1g08470 strictosidine synthase family protein C.G. S.X.
0.02 4e-4 46 HU14P01u_at HU14P01u - - 1e+0 At2g23430 ICK1 C.G. S.X.
0.03 4e-4 46 HC108A06_SK_at HC108A06_SK - - 8e-1 At5g58280 transcriptional factor B3 family protein C.G. S.X.
0.03 2e-3 44 Contig17078_at Contig17078 - - 4e-11 At3g02020 AK3 (ASPARTATE KINASE 3) C.G. S.X.
0.02 2e-3 44 Contig11980_at Contig11980 - - 3e-2 At3g57920 SPL15 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 15) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.36 8e-38 159 Arabidopsis thaliana At5g13280 831169 AK-LYS1 (ASPARTATE KINASE 1) Asp kinase inhibited by Lys and S-adenosylmethionine. Contains regulatory domains that belong to the ACT domain family, which allow binding to a extreme variety of ligands. Can function as a monomer or as a dimer with acetohydroxyacid synthase (HSDH). - - - C.G. S.X.
0.39 1e-37 159 Glycine max Gma.1024.1.S1_at AF135862.1 precursor monofunctional aspartokinase - 2e-69 At5g14060 CARAB-AK-LYS C.G. S.X.
0.58 0 1324 Oryza sativa Os03g0850400 AK121930.1 - Aspartate kinase precursor (EC 2.7.2.4) 4e-49 At5g13280 AK-LYS1 (ASPARTATE KINASE 1) C.G. S.X.
0.44 1e-49 198 Populus trichocarpa PtpAffx.10376.1.S1_a_at AJ769933 hypothetical protein - 7e-78 At5g13280 AK-LYS1 (ASPARTATE KINASE 1) C.G. S.X.
0.80 0 1584 Triticum aestivum Ta.2845.1.S1_at BT009484.1 - - 5e-30 At5g13280 AK-LYS1 (ASPARTATE KINASE 1) C.G. S.X.
0.03 3e-4 46 Vitis vinifera 1614133_at CD711415 hypothetical protein LOC100255873 - 5e-2 At1g43800 acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative C.G. S.X.
0.19 2e-27 123 Zea mays Zm.5624.1.A1_at CO534105 hypothetical protein LOC100279553 - 4e-29 At5g13280 AK-LYS1 (ASPARTATE KINASE 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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