Gene omics information

Query gene ID	Contig10036_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	Contig10036_at	Contig10036	-	-	2e+0	At1g30060	COP1-interacting protein-related	S.X.	H.G.	Please select
0.50	66.9	Contig125_at	Contig125	-	-	2e+0	At4g25720	QC (GLUTAMINYL CYCLASE)	S.X.	H.G.	Please select
0.46	61.0	Contig14753_at	Contig14753	-	-	4e-7	At5g38060	unknown protein	S.X.	H.G.	Please select
0.44	58.9	Contig15156_at	Contig15156	-	-	2e+0	At1g48210	serine/threonine protein kinase, putative	S.X.	H.G.	Please select
0.42	55.2	Contig3633_s_at	Contig3633	-	-	7e-1	At3g13480	unknown protein	S.X.	H.G.	Please select
0.36	47.1	Contig5226_at	Contig5226	-	-	1e-1	At1g79790	haloacid dehalogenase-like hydrolase family protein	S.X.	H.G.	Please select
0.33	42.6	Contig1512_at	Contig1512	-	-	0	At5g12250	TUB6 (BETA-6 TUBULIN)	S.X.	H.G.	Please select
0.29	35.5	Contig13413_at	Contig13413	-	-	1e+0	At3g46210	3' exoribonuclease family domain 1-containing protein	S.X.	H.G.	Please select
0.28	35.5	Contig13060_at	Contig13060	-	-	5e-10	At4g10060	catalytic/ glucosylceramidase	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.0	96.0	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
3.7	95.5	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.4	94.8	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.3	94.6	GSM440961	Stressed lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress
3.0	93.8	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
2.9	93.4	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
2.8	93.1	GSM419975	Palea_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
2.8	93.1	GSM440963	Control palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
2.7	92.7	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.7	92.7	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	8e-2	38	Contig21645_at	Contig21645	-	-	3e+0	At1g60760	invertase/pectin methylesterase inhibitor family protein	C.G.	S.X.	Please select
0.01	8e-2	38	Contig8757_at	Contig8757	-	-	5e-5	At3g21215	RNA-binding protein, putative	C.G.	S.X.	Please select
0.02	3e-1	36	HVSMEm0018L07r2_at	HVSMEm0018L07r2	-	-	2e-1	At5g27370	unknown protein	C.G.	S.X.	Please select
0.02	3e-1	36	Contig12344_at	Contig12344	-	-	1e-1	At4g11220	BTI2 (VIRB2-INTERACTING PROTEIN 2)	C.G.	S.X.	Please select
0.02	1e+0	34	Contig17687_at	Contig17687	-	-	5e-4	At1g43620	UDP-glucose:sterol glucosyltransferase, putative	C.G.	S.X.	Please select
0.01	1e+0	34	Contig8183_at	Contig8183	-	-	1e-42	At3g59760	OASC (O-ACETYLSERINE (THIOL) LYASE ISOFORM C)	C.G.	S.X.	Please select
0.02	1e+0	34	Contig20602_at	Contig20602	-	-	4e+0	At4g35930	-	C.G.	S.X.	Please select
0.01	1e+0	34	Contig14344_at	Contig14344	-	-	7e-47	At5g48600	ATSMC3 (ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 3)	C.G.	S.X.	Please select
0.01	1e+0	34	Contig11649_at	Contig11649	-	-	1e-1	At1g21840	UREF (urease accessory protein F)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+0	34	Arabidopsis thaliana	At1g30060	839885	COP1-interacting protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.16	4e-9	63	Glycine max	GmaAffx.87072.1.S1_at	BI784972	-	-	2e-9	At3g28970	AAR3 (antiauxin-resistant 3)	C.G.	S.X.	Please select
0.38	1e-93	345	Oryza sativa	Os07g0631000	AK066723.1	-	Protein of unknown function DUF298 family protein	3e+0	At3g20170	armadillo/beta-catenin repeat family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.08	6e-14	79	Populus trichocarpa	PtpAffx.71827.1.A1_at	CV258472	hypothetical protein	-	8e-18	At3g28970	AAR3 (antiauxin-resistant 3)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.90	0	1980	Triticum aestivum	Ta.4384.1.S1_at	BQ170958	-	-	3e+0	At1g30060	COP1-interacting protein-related	C.G.	S.X.	Please select
0.08	1e-17	89	Vitis vinifera	1612909_at	CF404929	hypothetical protein LOC100264659	-	3e-8	At3g28970	AAR3 (antiauxin-resistant 3)	C.G.	S.X.	Please select
0.42	7e-79	293	Zea mays	Zm.2321.6.A1_at	AI677502	hypothetical protein LOC100277354	-	3e-3	At3g28970	AAR3 (antiauxin-resistant 3)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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