Gene omics information

Query gene ID At5g67530
Gene name peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.3338.1At5g67530836889peptidyl-prolyl cis-trans isomerase cyclophilin-type family proteinF:ubiquitin-protein ligase activity, peptidyl-prolyl cis-trans isomerase activity;P:protein folding, protein ubiquitination;C:ubiquitin ligase complex;OBMFPAS.X.H.G.
0.5773.8At3g12640820444RNA binding / nucleic acid binding / nucleotide bindingF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFBOVS.X.H.G.
0.5065.3At3g11910820364UBP13 (UBIQUITIN-SPECIFIC PROTEASE 13)F:ubiquitin-specific protease activity, ubiquitin thiolesterase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;MOPFBVS.X.H.G.
0.4050.8At4g16420827336ADA2B (HOMOLOG OF YEAST ADA2 2B)Transcriptional co-activator. Essential for the developmental switch from cell proliferation to cell differentiation in response to variations in auxin and cytokinin concentrations.S.X.H.G.
0.3133.8At3g57300824897INO80 (INO80 ORTHOLOG)Encodes the Arabidopsis INO80 ortholog of the SWI/SNF ATPase family. Functions as a positive regulator of DNA homologous recombination (HR). In INO80 mutants, the HR frequency is reduced to 15% of that in the wild-type. Mutation in INO80 does not affect sensitivity to genotoxic agents and efficiency of T-DNA integration. INO80 was also shown to regulate a subset of the Arabidopsis transcriptome.S.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
33.699.7GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
31.099.7GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
29.099.7GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
28.199.7GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.026e-240At1g05385837040photosystem II 11 kDa protein-relatedF:molecular_function unknown;P:biological_process unknown;C:chloroplast;OBPC.G.S.X.
0.019e-136At5g59660836087leucine-rich repeat protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:cellular_component unknown;PMOBFVAC.G.S.X.
0.019e-136At5g46330834676FLS2 (FLAGELLIN-SENSITIVE 2)Encodes a leucine-rich repeat serine/threonine protein kinase that is expressed ubiquitously. FLS2 is involved in MAP kinase signalling relay involved in innate immunity. Essential in the perception of flagellin, a potent elicitor of the defense response. FLS2 is directed for degradation by the bacterial ubiquitin ligase AvrPtoB.C.G.S.X.
0.019e-136At5g01080831873beta-galactosidaseF:beta-galactosidase activity;P:carbohydrate metabolic process;C:beta-galactosidase complex;PC.G.S.X.
0.019e-136At4g16670827369phosphoinositide bindingF:phosphoinositide binding;P:signal transduction;C:cellular_component unknown;PFOC.G.S.X.
0.029e-136At4g10845826681unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PC.G.S.X.
0.019e-136At4g14900827147hydroxyproline-rich glycoprotein family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFOBVC.G.S.X.
0.019e-136At2g01280814656MEE65 (maternal effect embryo arrest 65)F:RNA polymerase II transcription factor activity, cation:chloride symporter activity;P:embryonic development ending in seed dormancy;C:transcription factor complex, nucleus;OMFABPVC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.035e-654Glycine maxGmaAffx.70072.1.S1_atBM086642--3e-2At2g16600ROC3C.G.S.X.
0.012e+034Hordeum vulgareContig12135_atContig12135--2e-4At3g07630ADT2 (arogenate dehydratase 2)C.G.S.X.
0.285e-1687Oryza sativaOs03g0201100AK102337.1-Peptidyl-prolyl cis-trans isomerase like 2 (EC5.2.1.8) (PPIase) (Rotamase) (Cyclophilin-60)(Cyclophilin-like protein Cyp-60)4e-16At5g67530peptidyl-prolyl cis-trans isomerase cyclophilin-type family proteinC.G.S.X.
0.411e-56222Populus trichocarpaPtpAffx.205404.1.S1_atpmrna10702hypothetical protein-2e-56At5g67530peptidyl-prolyl cis-trans isomerase cyclophilin-type family proteinC.G.S.X.
0.142e-861Triticum aestivumTaAffx.91987.1.S1_atBJ294116--7e-9At5g67530peptidyl-prolyl cis-trans isomerase cyclophilin-type family proteinC.G.S.X.
0.021e+034Vitis vinifera1612525_atCF516179hypothetical protein LOC100263804-2e+0At1g77910unknown proteinC.G.S.X.
0.033e-240Zea maysZm.12459.1.A1_atBE186592--9e-6At3g44600CYP71 (CYCLOPHILIN71)C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0006457The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
LGO:0016567The process by which one or more ubiquitin moieties are added to a protein.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

04120Link to KEGG PATHWAYUbiquitin mediated proteolysis
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