Gene omics information

Query gene ID At5g67340
Gene name armadillo/beta-catenin repeat family protein / U-box domain-containing protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.3133.8At5g67340836869armadillo/beta-catenin repeat family protein / U-box domain-containing proteinF:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:endomembrane system, ubiquitin ligase complex;PMOFBS.X.H.G.
0.4761.2At3g13100820498ATMRP7member of MRP subfamilyS.X.H.G.
0.4050.8At4g39030830058EDS5 (ENHANCED DISEASE SUSCEPTIBILITY 5)Encodes an orphan multidrug and toxin extrusion transporter. Essential component of salicylic acid-dependent signaling for disease resistance. Member of the MATE-transporter family. Expression induced by salicylic acid. Mutants are salicylic acid-deficient.S.X.H.G.
0.3338.1At3g52430824408PAD4 (PHYTOALEXIN DEFICIENT 4)Encodes a lipase-like gene that is important for salicylic acid signaling and function in resistance (R) gene-mediated and basal plant disease resistance. PAD4 can interact directly with EDS1, another disease resistance signaling protein. Expressed at elevated level in response to green peach aphid (GPA) feeding, and modulates the GPA feeding-induced leaf senescence through a mechanism that doesn't require camalexin synthesis and salicylic acid (SA) signaling.S.X.H.G.
0.1811.4At1g08050837321zinc finger (C3HC4-type RING finger) family proteinF:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:plasma membrane;BMOPFAVS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
379.3100.0GSM67086Arabidopsis_Stigma02GSE3056Arabidopsis Pollination Study
309.9100.0GSM67087Arabidopsis_Stigma03GSE3056Arabidopsis Pollination Study
111.099.9GSM128661Underwood_1-14_Cor-5x10e7-10h_Rep2_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
97.099.9GSM244455Arabidopsis AtMYB30-ox_6 h_ Xanthomonas inoculated_biological rep1_exp1GSE9674Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints
70.699.9GSM184520Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
69.499.9GSM128662Underwood_1-15_Cor-5x10e7-10h_Rep3_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
66.399.8GSM184917Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 2GSE7641Expression analysis of root cell-types after treatment with salt
62.099.8GSM142839MG001_ATH1_A18-Torres-6N6GSE6176Impact of Type III effectors on plant defense responses
58.999.8GSM142837MG001_ATH1_A16-Torres-6N1GSE6176Impact of Type III effectors on plant defense responses
56.799.8GSM184900Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with salt
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.052e-242At2g23140816846binding / ubiquitin-protein ligaseF:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:ubiquitin ligase complex;OPMFBVAC.G.S.X.
0.022e-242At1g23030838911armadillo/beta-catenin repeat family protein / U-box domain-containing proteinF:ubiquitin-protein ligase activity, binding;P:response to chitin;C:ubiquitin ligase complex;PMOFBVC.G.S.X.
0.013e-138At1g06840837196leucine-rich repeat transmembrane protein kinase, putativeF:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane, membrane;MPOBFVAC.G.S.X.
0.011e+036At5g04890830370RTM2 (RESTRICTED TEV MOVEMENT 2)Specifically restricts the long-distance movement of tobacco etch potyvirus (TEV) without involving either hypersensitive cell death or systemic acquired resistance. Multidomain protein containing an N-terminal region with high similarity to plant small heat shock proteins (HSPs).C.G.S.X.
0.011e+036At5g62470836367MYB96 (myb domain protein 96)Encodes a R2R3 type Myb transcription factor whose expression is strongly induced by abscisic acid.C.G.S.X.
0.011e+036At5g23480832414DNA bindingF:DNA binding;P:histone modification, transcription initiation;C:nucleus;PC.G.S.X.
0.011e+036At3g57300824897INO80 (INO80 ORTHOLOG)Encodes the Arabidopsis INO80 ortholog of the SWI/SNF ATPase family. Functions as a positive regulator of DNA homologous recombination (HR). In INO80 mutants, the HR frequency is reduced to 15% of that in the wild-type. Mutation in INO80 does not affect sensitivity to genotoxic agents and efficiency of T-DNA integration. INO80 was also shown to regulate a subset of the Arabidopsis transcriptome.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.032e-346Glycine maxGmaAffx.24953.1.A1_atBU544899--5e-3At2g23140binding / ubiquitin-protein ligaseC.G.S.X.
0.012e+034Hordeum vulgareHM02C20u_atHM02C20u--1e+0At5g48920TED7 (TRACHEARY ELEMENT DIFFERENTIATION-RELATED 7)C.G.S.X.
0.033e-242Oryza sativaOs01g0884400AK072566.1-The start codon is not identified.2e-9At2g23140binding / ubiquitin-protein ligaseC.G.S.X.
0.011e-140Populus trichocarpaPtpAffx.222671.1.S1_atpmrna40224hypothetical protein-5e-11At5g20950glycosyl hydrolase family 3 proteinC.G.S.X.
0.017e-240Triticum aestivumTa.17793.1.A1_atCA624381--4e+0At5g25990unknown proteinC.G.S.X.
0.011e+034Vitis vinifera1617666_a_atCF512265hypothetical protein LOC100260025-6e-2At5g54360zinc finger (C2H2 type) family protein-relatedC.G.S.X.
0.033e-240Zea maysZm.4163.1.A1_atAA979865--1e-10At2g23140binding / ubiquitin-protein ligaseC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0016567The process by which one or more ubiquitin moieties are added to a protein.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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