CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g67340

Gene name armadillo/beta-catenin repeat family protein / U-box domain-containing protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.31 33.8 At5g67340 836869 armadillo/beta-catenin repeat family protein / U-box domain-containing protein F:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:endomembrane system, ubiquitin ligase complex;PMOFB S.X. H.G.
0.47 61.2 At3g13100 820498 ATMRP7 member of MRP subfamily S.X. H.G.
0.40 50.8 At4g39030 830058 EDS5 (ENHANCED DISEASE SUSCEPTIBILITY 5) Encodes an orphan multidrug and toxin extrusion transporter. Essential component of salicylic acid-dependent signaling for disease resistance. Member of the MATE-transporter family. Expression induced by salicylic acid. Mutants are salicylic acid-deficient. S.X. H.G.
0.33 38.1 At3g52430 824408 PAD4 (PHYTOALEXIN DEFICIENT 4) Encodes a lipase-like gene that is important for salicylic acid signaling and function in resistance (R) gene-mediated and basal plant disease resistance. PAD4 can interact directly with EDS1, another disease resistance signaling protein. Expressed at elevated level in response to green peach aphid (GPA) feeding, and modulates the GPA feeding-induced leaf senescence through a mechanism that doesn't require camalexin synthesis and salicylic acid (SA) signaling. S.X. H.G.
0.18 11.4 At1g08050 837321 zinc finger (C3HC4-type RING finger) family protein F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:plasma membrane;BMOPFAV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
379.3 100.0 GSM67086 Arabidopsis_Stigma02 GSE3056 Arabidopsis Pollination Study
309.9 100.0 GSM67087 Arabidopsis_Stigma03 GSE3056 Arabidopsis Pollination Study
111.0 99.9 GSM128661 Underwood_1-14_Cor-5x10e7-10h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
97.0 99.9 GSM244455 Arabidopsis AtMYB30-ox_6 h_ Xanthomonas inoculated_biological rep1_exp1 GSE9674 Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints
70.6 99.9 GSM184520 Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
69.4 99.9 GSM128662 Underwood_1-15_Cor-5x10e7-10h_Rep3_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
66.3 99.8 GSM184917 Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
62.0 99.8 GSM142839 MG001_ATH1_A18-Torres-6N6 GSE6176 Impact of Type III effectors on plant defense responses
58.9 99.8 GSM142837 MG001_ATH1_A16-Torres-6N1 GSE6176 Impact of Type III effectors on plant defense responses
56.7 99.8 GSM184900 Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.05 2e-2 42 At2g23140 816846 binding / ubiquitin-protein ligase F:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:ubiquitin ligase complex;OPMFBVA C.G. S.X.
0.02 2e-2 42 At1g23030 838911 armadillo/beta-catenin repeat family protein / U-box domain-containing protein F:ubiquitin-protein ligase activity, binding;P:response to chitin;C:ubiquitin ligase complex;PMOFBV C.G. S.X.
0.01 3e-1 38 At1g06840 837196 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane, membrane;MPOBFVA C.G. S.X.
0.01 1e+0 36 At5g04890 830370 RTM2 (RESTRICTED TEV MOVEMENT 2) Specifically restricts the long-distance movement of tobacco etch potyvirus (TEV) without involving either hypersensitive cell death or systemic acquired resistance. Multidomain protein containing an N-terminal region with high similarity to plant small heat shock proteins (HSPs). C.G. S.X.
0.01 1e+0 36 At5g62470 836367 MYB96 (myb domain protein 96) Encodes a R2R3 type Myb transcription factor whose expression is strongly induced by abscisic acid. C.G. S.X.
0.01 1e+0 36 At5g23480 832414 DNA binding F:DNA binding;P:histone modification, transcription initiation;C:nucleus;P C.G. S.X.
0.01 1e+0 36 At3g57300 824897 INO80 (INO80 ORTHOLOG) Encodes the Arabidopsis INO80 ortholog of the SWI/SNF ATPase family. Functions as a positive regulator of DNA homologous recombination (HR). In INO80 mutants, the HR frequency is reduced to 15% of that in the wild-type. Mutation in INO80 does not affect sensitivity to genotoxic agents and efficiency of T-DNA integration. INO80 was also shown to regulate a subset of the Arabidopsis transcriptome. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e-3 46 Glycine max GmaAffx.24953.1.A1_at BU544899 - - 5e-3 At2g23140 binding / ubiquitin-protein ligase C.G. S.X.
0.01 2e+0 34 Hordeum vulgare HM02C20u_at HM02C20u - - 1e+0 At5g48920 TED7 (TRACHEARY ELEMENT DIFFERENTIATION-RELATED 7) C.G. S.X.
0.03 3e-2 42 Oryza sativa Os01g0884400 AK072566.1 - The start codon is not identified. 2e-9 At2g23140 binding / ubiquitin-protein ligase C.G. S.X.
0.01 1e-1 40 Populus trichocarpa PtpAffx.222671.1.S1_at pmrna40224 hypothetical protein - 5e-11 At5g20950 glycosyl hydrolase family 3 protein C.G. S.X.
0.01 7e-2 40 Triticum aestivum Ta.17793.1.A1_at CA624381 - - 4e+0 At5g25990 unknown protein C.G. S.X.
0.01 1e+0 34 Vitis vinifera 1617666_a_at CF512265 hypothetical protein LOC100260025 - 6e-2 At5g54360 zinc finger (C2H2 type) family protein-related C.G. S.X.
0.03 3e-2 40 Zea mays Zm.4163.1.A1_at AA979865 - - 1e-10 At2g23140 binding / ubiquitin-protein ligase C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0016567 The process by which one or more ubiquitin moieties are added to a protein.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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