Gene omics information

Query gene ID At5g67330
Gene name ATNRAMP4
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g67330836868ATNRAMP4Encodes a member of the Nramp2 metal transporter family; like its homolog Atnramp3, localized in vacuolar membrane. Seedlings of double mutant, atnramp3-1 atnramp4-1, were arrested at early germination.S.X.H.G.
0.2217.5At3g27820822402MDAR4 (MONODEHYDROASCORBATE REDUCTASE 4)Encodes a peroxisome membrane-bound monodehydroascorbate reductase, involved in the ascorbate-glutathione cycle which removes toxic H2O2S.X.H.G.
0.2217.5At4g36190829776serine-type peptidaseF:serine-type peptidase activity;P:proteolysis;C:vacuole;MOFPBS.X.H.G.
0.071.9At1g63770842681peptidase M1 family proteinF:metallopeptidase activity, zinc ion binding;P:response to cadmium ion, proteolysis;C:in 6 components;BOMFPAS.X.H.G.
0.071.9At3g52880824454monodehydroascorbate reductase, putativeEncodes a peroxisomal monodehydroascorbate reductase, involved in the ascorbate-glutathione cycle which removes toxic H2O2S.X.H.G.
0.030.6At1g11910837740aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis, response to salt stress;C:vacuole;MFOPBS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
37.899.8GSM269813WT leaf-drought-rep1GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
25.999.7GSM269817T8 leaf-drought-rep1GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
24.299.6GSM125257Seedling_OETOP6B_rep2GSE5465Gene expression in wild-type and transgenic plants overexpressing rice topoisomerase6 genes
22.799.6GSM265473Arabidopsis, whole roots, -Fe, 72 hour, rep 1GSE10502Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
20.699.6GSM125256Seedling_OETOP6B_rep1GSE5465Gene expression in wild-type and transgenic plants overexpressing rice topoisomerase6 genes
18.999.5GSM105206sta1_no treatement_Rep2GSE4662STA1, a stress-upregulated nuclear protein, is required for pre-mRNA splicing, mRNA turnover and stress tolerance
18.899.5GSM265474Arabidopsis, whole roots, -Fe, 72 hour, rep 2GSE10502Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
18.799.5GSM269819C2 leaf-drought-rep1GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
18.299.5GSM269825T8 leaf-drought-rep2GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
17.699.5GSM125254Seedling_OEA3L5_rep1GSE5465Gene expression in wild-type and transgenic plants overexpressing rice topoisomerase6 genes
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.402e-44180At2g23150816847NRAMP3 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 3)Encodes a member of the Nramp2 metal transporter family; like its homolog Atnramp4, localized in vacuolar membrane. Seedlings of double mutant, atnramp3-1 atnramp4-1, were arrested at early germination.C.G.S.X.
0.239e-1685At1g47240841127NRAMP2Member of the NRAMP2 gene family of metal ion transporters.C.G.S.X.
0.231e-1481At4g18790827613NRAMP5member of Nramp2 familyC.G.S.X.
0.015e-240At3g56370824804leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVAC.G.S.X.
0.022e-138At2g04039814937unknown proteinF:molecular_function unknown;P:unknown;C:chloroplast;BOPC.G.S.X.
0.012e-138At1g01900839318SBTI1.1Encodes AtSBT1.1, a subtilisin-like serine protease. Cleaves the phytosulfokine AtPSK4, a growth promoting peptide.C.G.S.X.
0.018e-136At5g07990830693TT7 (TRANSPARENT TESTA 7)Required for flavonoid 3' hydroxylase activity.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.228e-1479Glycine maxGmaAffx.46439.1.S1_atBE806279--5e-25At1g47240NRAMP2C.G.S.X.
0.026e+032Hordeum vulgareContig20055_atContig20055--4e+0At4g26965NADH:ubiquinone oxidoreductase family proteinC.G.S.X.
0.107e-963Oryza sativaOs12g0581600AK071485.1-Integral membrane protein7e-8At1g47240NRAMP2C.G.S.X.
0.208e-1479Populus trichocarpaPtpAffx.202040.1.S1_atpmrna4065nramp transporter-5e-119At1g47240NRAMP2C.G.S.X.
0.033e-344Triticum aestivumTa.13247.1.S1_a_atCK198318--9e-9At1g47240NRAMP2C.G.S.X.
0.034e+032Vitis vinifera1617338_atBQ793025hypothetical protein LOC100262579-2e-22At1g47240NRAMP2C.G.S.X.
0.082e-1273Zea maysZm.13647.1.S1_atAY107242.1metal transporter Nramp3-3e-12At5g67330ATNRAMP4C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0055072Any process involved in the maintenance of an internal equilibrium of iron ions within an organism or cell.
XGO:0010039A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an iron ion stimulus.
XGO:0010670Any process that increases the frequency, rate or extent of the chemical reactions and pathways involving dioxygen (O2), or any of the reactive oxygen species, e.g. superoxide anions (O2-), hydrogen peroxide (H2O2), and hydroxyl radicals (-OH).
XGO:0042742Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.
XGO:0009624A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a nematode.
XGO:0006879Any process involved in the maintenance of an internal equilibrium of iron ions at the level of a cell.
SGO:0030001The directed movement of metal ions, any metal ion with an electric charge, into, out of, within or between cells.
SGO:0006828The directed movement of manganese (Mn) ions into, out of, within or between cells.
SGO:0015691The directed movement of cadmium (Cd) ions into, out of, within or between cells.
SGO:0015692The directed movement of lead (Pb) ions into, out of, within or between cells.
NGO:0006875Any process involved in the maintenance of an internal equilibrium of metal ions at the level of a cell.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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