CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g67260

Gene name CYCD3

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.39 48.4 At5g67260 836861 CYCD3 Encode CYCD3;2, a CYCD3 D-type cyclin. Important for determining cell number in developing lateral organs. Mediating cytokinin effects in apical growth and development. S.X. H.G.
0.67 81.6 At5g43020 834317 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA S.X. H.G.
0.63 78.1 At3g61830 825356 ARF18 (AUXIN RESPONSE FACTOR 18) F:transcription factor activity;P:response to hormone stimulus, regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;PMBAFO S.X. H.G.
0.57 73.8 At4g29360 829057 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to plasma membrane, anchored to membrane;PFOB S.X. H.G.
0.50 65.3 At3g17680 821035 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMBF S.X. H.G.
0.50 65.3 At3g57830 824952 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA S.X. H.G.
0.50 65.3 At3g61310 825303 DNA-binding family protein F:DNA binding;P:biological_process unknown;C:cellular_component unknown;PMFOB S.X. H.G.
0.48 62.5 At3g56370 824804 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.47 61.2 At1g02730 839467 ATCSLD5 Encodes a gene similar to cellulose synthase. Knock-out mutant has reduced growth, reduced xylan level and reduced xylan synthase activity in stems. S.X. H.G.
0.47 61.2 At4g38660 830022 thaumatin, putative F:molecular_function unknown;P:response to other organism;C:anchored to membrane;PFMBOV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
87.4 99.9 GSM242955 Steroid day 1 (day1D1) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
80.0 99.9 GSM242957 Mock day 3 (day3E1) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
74.8 99.9 GSM242959 Steroid day 3 (day3D1) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
60.6 99.8 GSM242956 Steroid day 1 (day1D2) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
60.0 99.8 GSM242958 Mock day 3 (day3E2) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
49.5 99.8 GSM242954 Mock day 1 (day1E2) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
48.1 99.8 GSM242960 Steroid day 3 (day3D2) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
35.2 99.7 GSM242953 Mock day 1 (day1E1) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
21.3 99.6 E-MEXP-728-raw-cel-1062074155
21.2 99.6 E-MEXP-728-raw-cel-1062074005
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.40 5e-72 272 At3g50070 824169 CYCD3 Encode CYCD3;3, a CYCD3 D-type cyclin. Important for determining cell number in developing lateral organs. Mediating cytokinin effects in apical growth and development. C.G. S.X.
0.01 1e-4 48 At4g02350 828060 exocyst complex subunit Sec15-like family protein F:molecular_function unknown;P:pollen germination, pollen tube growth;C:plasma membrane, membrane, exocyst;MFPO C.G. S.X.
0.01 4e-2 40 At4g05360 825884 zinc knuckle (CCHC-type) family protein F:zinc ion binding, nucleic acid binding;P:unknown;C:nuclear chromosome;POFMB C.G. S.X.
0.01 1e-1 38 At3g06670 819852 binding F:binding;P:biological_process unknown;C:cellular_component unknown;MOFPBV C.G. S.X.
0.01 1e-1 38 At2g28390 817387 SAND family protein F:unknown;P:unknown;C:chloroplast;MFOBPAV C.G. S.X.
0.02 1e-1 38 At2g36050 818178 OFP15 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 15) F:unknown;P:unknown;C:chloroplast;PO C.G. S.X.
0.02 1e-1 38 At2g45470 819155 FLA8 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 8) F:unknown;P:unknown;C:anchored to plasma membrane, apoplast, plasma membrane, anchored to membrane, plant-type cell wall;OBPMVFA C.G. S.X.
0.01 1e-1 38 At1g60590 842353 polygalacturonase, putative / pectinase, putative F:polygalacturonase activity;P:carbohydrate metabolic process;C:unknown;FPBMOVA C.G. S.X.
0.02 5e-1 36 At5g65420 836667 CYCD4 Encodes a D-type cyclin CYCD4;1 that physically interacts with CDC2A and is expressed during vascular tissue development, embryogenesis, and formation of lateral root primordia. Its expression is upregulated early during germination.Involved in stomatal cell lineage proliferation in the hypocotyl. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 8e-1 36 Glycine max Gma.13544.1.S1_at CD417852 cyclin d3 - 7e-10 At4g34160 CYCD3 C.G. S.X.
0.02 4e+0 32 Hordeum vulgare Contig20616_at Contig20616 - - 4e+0 At5g67260 CYCD3 C.G. S.X.
0.02 3e-1 38 Oryza sativa Os08g0418300 9636.m03228 - - 3e-2 At5g14690 unknown protein C.G. S.X.
0.17 6e-11 69 Populus trichocarpa Ptp.5408.1.S1_s_at AY230139.1 hypothetical protein - 5e-11 At5g67260 CYCD3 C.G. S.X.
0.03 1e-1 38 Triticum aestivum TaAffx.119565.1.S1_at BJ268062 - - 7e-2 At5g67260 CYCD3 C.G. S.X.
0.10 7e-7 54 Vitis vinifera 1610683_at CF214265 hypothetical protein LOC100264093 - 2e-6 At5g67260 CYCD3 C.G. S.X.
0.02 9e-1 34 Zea mays Zm.14710.1.S1_at AY232823.1 nucleosome/chromatin assembly factor group A - 1e-5 At4g26110 NAP1 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0042127 Any process that modulates the frequency, rate or extent of cell proliferation.
C GO:0051726 Any process that modulates the rate or extent of progression through the cell cycle.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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