CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g67210

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g67210 836856 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POB S.X. H.G.
0.95 97.0 At2g38080 818386 IRX12 (IRREGULAR XYLEM 12) Encodes a protein with similarity to putative laccase, a member of laccase family (17 members in Arabidopsis). Might be involved in cell wall biosynthesis. Mutants have a mild irregular xylem phenotype. S.X. H.G.
0.95 97.0 At5g15630 831417 IRX6 Encodes a member of the COBRA family, similar to phytochelatin synthetase. Involved in secondary cell wall biosynthesis. Mutants make smaller plants with reduced levels of cellulose and cell wall sugars. S.X. H.G.
0.95 97.0 At5g44030 834426 CESA4 (CELLULOSE SYNTHASE A4) Encodes a cellulose synthase involved in secondary cell wall biosynthesis. Confers resistance towards bacterial and fungal pathogens, independent of salicylic acid, ethylene and jasmonate signaling. S.X. H.G.
0.95 97.0 At5g54690 835558 GAUT12 (GALACTURONOSYLTRANSFERASE 12) Encodes a protein with putative galacturonosyltransferase activity. Mutants defective in this gene displayed a notable reduction in xylose (>50%) in the cell walls from stems and roots and a reduction in cellulose (~25%). S.X. H.G.
0.91 95.6 At4g27435 828852 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.91 95.6 At4g28500 828968 ANAC073 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 73) F:transcription factor activity, transcription activator activity;P:multicellular organismal development, regulation of secondary cell wall thickening;C:nucleus;PO S.X. H.G.
0.90 95.1 At5g17420 831608 IRX3 (IRREGULAR XYLEM 3) Encodes a xylem-specific cellulose synthase that is phosphorylated on one or more serine residues (on either S185 or one of S180 or S181). S.X. H.G.
0.88 94.0 At3g16920 820947 chitinase F:chitinase activity;P:cell wall macromolecule catabolic process;C:unknown;PBMOF S.X. H.G.
0.88 94.0 At3g18660 821397 PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) Plants expressing an RNAi construct specifically targeting PGSIP1 was shown to have a dramatically reduced amount of starch. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
293.6 100.0 E-MEXP-265-raw-cel-414618394
262.1 100.0 E-MEXP-265-raw-cel-414618291
236.4 100.0 E-MEXP-265-raw-cel-414618491
213.1 100.0 E-MEXP-265-raw-cel-414618796
202.5 100.0 GSM131655 ATGE_27_A GSE5633 AtGenExpress: Developmental series (shoots and stems)
195.6 100.0 E-MEXP-265-raw-cel-414618693
174.7 100.0 E-MEXP-265-raw-cel-414617695
173.9 100.0 GSM131656 ATGE_27_B GSE5633 AtGenExpress: Developmental series (shoots and stems)
172.5 100.0 E-MEXP-265-raw-cel-414617783
145.6 99.9 GSM131657 ATGE_27_C GSE5633 AtGenExpress: Developmental series (shoots and stems)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.70 4e-180 630 At3g50220 824184 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;POB C.G. S.X.
0.02 8e-3 42 At2g47590 819372 PHR2 (photolyase/blue-light receptor 2) photolyase/blue light photoreceptor PHR2 (PHR2) mRNA, C.G. S.X.
0.02 1e-1 38 At4g16790 827385 hydroxyproline-rich glycoprotein family protein F:unknown;P:unknown;C:unknown;MPFOBVA C.G. S.X.
0.02 5e-1 36 At5g37970 833776 S-adenosyl-L-methionine:carboxyl methyltransferase family protein F:S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity;P:biological_process unknown;C:unknown;POBMF C.G. S.X.
0.01 5e-1 36 At4g18670 827601 protein binding / structural constituent of cell wall F:structural constituent of cell wall, protein binding;P:unknown;C:endomembrane system;MBPFOVA C.G. S.X.
0.02 5e-1 36 At3g50870 824251 MNP (MONOPOLE) mutant has Embryo defect; GATA Factor Transcriptional Regulator C.G. S.X.
0.02 5e-1 36 At2g41750 818774 DTW domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMPO C.G. S.X.
0.01 5e-1 36 At1g77270 844063 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPBF C.G. S.X.
0.02 2e+0 34 At5g59530 836072 2-oxoglutarate-dependent dioxygenase, putative F:transferase activity, transferring glycosyl groups;P:unknown;C:unknown;POBFM C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.17 3e-6 54 Glycine max Gma.11522.2.S1_at BG650872 - - 6e-9 At3g50220 unknown protein C.G. S.X.
0.02 9e-1 34 Hordeum vulgare HA10F20u_x_at HA10F20u - - 4e+0 At2g42240 nucleic acid binding / nucleotide binding C.G. S.X.
0.03 1e-3 46 Oryza sativa Os06g0687600 CF196060 - Uncharacterized plant-specific domain 01627containing protein 8e+0 At5g06265 hyaluronan mediated motility receptor-related C.G. S.X.
0.13 2e-7 57 Populus trichocarpa PtpAffx.21514.2.S1_s_at CN549302 hypothetical protein - 2e-7 At5g67210 unknown protein C.G. S.X.
0.03 2e+0 34 Triticum aestivum Ta.29551.1.A1_at CA719367 - - 4e-3 At5g27520 PNC2 (PEROXISOMAL ADENINE NUCLEOTIDE CARRIER 2) C.G. S.X.
0.04 2e+0 32 Vitis vinifera 1622695_at CF414053 hypothetical protein LOC100267469 - 2e-2 At3g63230 unknown protein C.G. S.X.
0.02 3e+0 32 Zea mays Zm.8292.1.S1_at AY106611.1 hypothetical protein LOC100275334 - 6e-15 At4g16450 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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