CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g67060

Gene name HEC1 (HECATE 1)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.16 8.8 At5g67060 836841 HEC1 (HECATE 1) F:transcription factor activity;P:transmitting tissue development, carpel formation, regulation of transcription;C:nucleus;PMBOFA S.X. H.G.
0.50 65.3 At5g44440 834471 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOAM S.X. H.G.
0.46 59.8 At4g35720 829724 unknown protein F:unknown;P:unknown;C:unknown;PO S.X. H.G.
0.40 50.8 At2g46990 819313 IAA20 (INDOLE-3-ACETIC ACID INDUCIBLE 20) Encodes a member of the Aux/IAA family of proteins implicated in auxin signaling. IAA20 lacks the conserved degron (domain II) found in many family members, and IAA20 fusion proteins are stable in Arabidopsis seedlings. IAA20 transcripts are induced by auxin treatment, and overexpression of IAA20 leads to defects in gravitropism, root development, root meristem maintenance, etiolation, and cotyledon vascular development. S.X. H.G.
0.40 50.8 At5g54190 835507 PORA light-dependent NADPH:protochlorophyllide oxidoreductase A S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
108.2 99.9 GSM109109 wild-type(Col-0) 1 day, biological rep3 GSE4847 Expression data from tocopherol deficient seedlings of Arabidopsis
85.3 99.9 GSM109114 vte2-1(Col-0) 1 day, biological rep2 GSE4847 Expression data from tocopherol deficient seedlings of Arabidopsis
81.1 99.9 GSM109113 vte2-1(Col-0) 1 day, biological rep1 GSE4847 Expression data from tocopherol deficient seedlings of Arabidopsis
78.2 99.9 GSM109108 wild-type(Col-0) 1 day, biological rep2 GSE4847 Expression data from tocopherol deficient seedlings of Arabidopsis
72.9 99.9 E-MEXP-1304-raw-cel-1530618136
68.1 99.9 E-MEXP-715-raw-cel-1121836334
66.8 99.8 GSM9630 arf2-6_+IAA_1 GSE630 Auxin-mediated gene expression
64.5 99.8 E-MEXP-1304-raw-cel-1530618104
59.3 99.8 E-MEXP-1304-raw-cel-1530618171
53.3 99.8 E-MEXP-1304-raw-cel-1530617935
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.43 7e-55 214 At3g50330 824195 HEC2 (HECATE 2) F:transcription factor activity, DNA binding;P:ovary septum development, transmitting tissue development, carpel formation, regulation of transcription;C:nucleus;P C.G. S.X.
0.13 2e-8 59 At3g21330 821687 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFMO C.G. S.X.
0.04 6e-3 42 At5g09750 830835 HEC3 (HECATE 3) F:transcription factor activity, DNA binding;P:transmitting tissue development, carpel formation, regulation of transcription;C:nucleus;POF C.G. S.X.
0.03 9e-2 38 At5g62210 836342 embryo-specific protein-related F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;MPOFVBA C.G. S.X.
0.02 9e-2 38 At5g62170 836338 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBV C.G. S.X.
0.03 9e-2 38 At4g38680 830024 GRP2 (GLYCINE RICH PROTEIN 2) Encodes a glycine-rich protein that binds nucleic acids and promotes DNA melting. Its transcript and protein levels are up-regulated in response to cold treatment with protein levels peaking earlier in shoots (~10-14 days) than in roots (~21 days). It is normally expressed in meristematic regions and developing tissues where cell division occurs. RNAi and antisense lines with lower levels of CSP2/GRP2 transcripts flower earlier than wild type plants and have some defects in anther and seed development. C.G. S.X.
0.02 9e-2 38 At4g37260 829880 MYB73 (MYB DOMAIN PROTEIN 73) Member of the R2R3 factor gene family. C.G. S.X.
0.01 9e-2 38 At3g51830 824346 ATG5 putative transmembrane protein G5p (AtG5) mRNA, complete C.G. S.X.
0.02 9e-2 38 At1g48280 841248 hydroxyproline-rich glycoprotein family protein F:unknown;P:biological_process unknown;C:unknown;MPOFBVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.19 3e-5 50 Glycine max GmaAffx.29254.1.S1_at AW760361 - - 4e-5 At5g67060 HEC1 (HECATE 1) C.G. S.X.
0.06 1e-2 40 Hordeum vulgare HS09F06u_at HS09F06u - - 3e-4 At3g50330 HEC2 (HECATE 2) C.G. S.X.
0.04 4e-2 40 Oryza sativa OsAffx.19918.1.A1_at - - - 0 C.G. S.X.
0.12 3e-8 59 Populus trichocarpa PtpAffx.207267.1.S1_at pmrna14415 hypothetical protein - 1e-13 At3g50330 HEC2 (HECATE 2) C.G. S.X.
0.04 4e-1 36 Triticum aestivum TaAffx.59129.1.S1_at CA607224 - - 8e+0 At4g27610 unknown protein C.G. S.X.
0.03 1e-1 36 Vitis vinifera 1620184_at CB342898 hypothetical protein LOC100253198 - 1e-22 At2g22780 PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1) C.G. S.X.
0.03 2e-1 36 Zea mays Zm.8848.1.A1_at BM075900 - - 1e-2 At5g44570 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0010500 The process whose specific outcome is the progression of the transmitting tract over time, from its formation to the mature structure. The transmitting tissue is the tissue in the style of a carpel through which the pollen tube grows; it connects the stigma and the inside of ovary.
X GO:0048462 The process that gives rise to the carpel. This process pertains to the initial formation of a structure from unspecified parts.
S GO:0045449 Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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