CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g67020

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.38 46.7 At5g67020 836837 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PB S.X. H.G.
0.73 85.5 At3g15540 820793 IAA19 (INDOLE-3-ACETIC ACID INDUCIBLE 19) IAA induced protein 19 S.X. H.G.
0.56 73.0 At2g18010 816313 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO S.X. H.G.
0.50 65.3 At3g42800 823322 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;OMBFP S.X. H.G.
0.44 57.2 At4g16515 827350 unknown protein F:molecular_function unknown;P:unknown;C:endomembrane system;P S.X. H.G.
0.20 14.4 At3g14370 820658 WAG2 The WAG2 and its homolog, WAG1 each encodes protein-serine/threonine kinase that are nearly 70% identical to PsPK3 protein. All three together with CsPK3 belong to PsPK3-type kinases. At the N-terminus, all four possess a serine/threonine-rich domain. They are closely related to Arabidopsis kinases PINOID. wag1/wag2 double mutants exhibit a pronounced wavy root phenotype when grown vertically on agar plates (while wild-type plants develop wavy roots only on plates inclined to angles less than 90 degrees), indicating an overlapping role for WAG1 and WAG2 as suppressors of root waving. Simultaneous disruption of PID(AT2G34650) and its 3 closest homologs (PID2/AT2G26700, WAG1/AT1G53700, and WAG2/AT3G14370) abolishes the formation of cotyledons. S.X. H.G.
0.19 12.7 At1g27670 839659 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
134.6 99.9 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
95.9 99.9 E-MEXP-715-raw-cel-1121835979
91.5 99.9 GSM131609 ATGE_43_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
84.9 99.9 GSM131207 AtGen_D-41_3-DS_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
84.0 99.9 GSM131610 ATGE_43_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
83.9 99.9 E-MEXP-715-raw-cel-1121836087
83.6 99.9 GSM131611 ATGE_43_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
78.3 99.9 E-MEXP-715-raw-cel-1121836113
67.3 99.8 E-MEXP-715-raw-cel-1121836005
61.8 99.8 GSM131199 AtGen_D-33_3-DL_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.74 5e-91 335 At3g50340 824196 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PBFO C.G. S.X.
0.02 6e-4 46 At1g54200 841860 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPB C.G. S.X.
0.02 2e-3 44 At3g49800 824142 BSD domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMVOF C.G. S.X.
0.01 4e-2 40 At4g17430 827454 unknown protein F:molecular_function unknown;P:biological_process unknown;C:Golgi apparatus;PF C.G. S.X.
0.03 4e-2 40 At2g28625 2745569 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P C.G. S.X.
0.02 1e-1 38 At3g62630 825437 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFBA C.G. S.X.
0.03 1e-1 38 At2g21740 816711 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.03 1e-1 38 At2g32890 817850 RALFL17 (RALF-LIKE 17) Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. This gene is contained within a highly AT-rich repetitive sequence region. C.G. S.X.
0.01 1e-1 38 At1g50040 841428 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMBV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 2e-4 48 Glycine max Gma.14139.1.A1_at CD416275 - - 7e-7 At3g50340 unknown protein C.G. S.X.
0.03 1e+0 34 Hordeum vulgare Contig26236_at Contig26236 - - 1e-6 At1g76820 GTP binding / GTPase C.G. S.X.
0.03 3e-1 38 Oryza sativa Os11g0530600 AB000801.2 - Chalcone synthase C2 (EC 2.3.1.74)(Naringenin-chalcone synthase C2) 1e-39 At5g13930 TT4 (TRANSPARENT TESTA 4) C.G. S.X.
0.25 7e-20 99 Populus trichocarpa PtpAffx.69736.1.A1_at CV245710 hypothetical protein - 1e-42 At3g50340 unknown protein C.G. S.X.
0.04 3e-3 44 Triticum aestivum Ta.26248.1.A1_at CD491678 - - 1e-3 At5g67020 unknown protein C.G. S.X.
0.02 3e+0 32 Vitis vinifera 1609318_at CF516798 hypothetical protein LOC100250040 - 4e-47 At1g70600 structural constituent of ribosome C.G. S.X.
0.03 4e+0 32 Zea mays Zm.18134.1.A1_at CN844971 - - 2e-1 At2g18050 HIS1-3 (HISTONE H1-3) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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