Gene omics information

Query gene ID At5g66780
Gene name unknown protein
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.9496.7At5g66780836811unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PS.X.H.G.
0.9396.4At5g62490836369ATHVA22BPart of the AtHVA22 family. Protein expression is ABA- and stress-inducible.S.X.H.G.
0.9095.1At1g32560840150late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing proteinF:molecular_function unknown;P:embryonic development ending in seed dormancy, embryonic development;C:cellular_component unknown;PMOS.X.H.G.
0.8994.6At1g62710842569BETA-VPE (BETA VACUOLAR PROCESSING ENZYME)Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteases that is expressed specifically in seeds and is essential for the proper processing of storage proteins.S.X.H.G.
0.8592.4At3g19920821530unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBS.X.H.G.
0.8592.4At2g41280818727M10Encodes a hydrophilic protein similar to Late Embryogenesis Activated (LEA) proteins expressed during embryogenesis, which are thought to be involved in the acquisition of dessication tolerance.S.X.H.G.
0.8592.4At3g24650822061ABI3 (ABA INSENSITIVE 3)Homologous to the maize transcription factor Viviparous-1. Full length ABI3 protein binds to the highly conserved RY motif [DNA motif CATGCA(TG)], present in many seed-specific promoters, and the B3 domains of this transcription factor is necessary for the specific interaction with the RY element. Transcriptional activity of ABI3 requires the B3 DNA-binding domain and an activation domain. In addition to the known N-terminal-located activation domain, a second transcription activation domain was found in the B1 region of ABI3. ABI3 is essential for seed maturation. Regulator of the transition between embryo maturation and early seedling development. Putative seed-specific transcriptional activator. Mutants exhibit decreased responsiveness to ABA suggesting that ABI3 protein participates in the ABA perception/transduction cascade. Based on double mutant analyses, ABI3 interacts genetically with both FUS3 and LEC1 and is involved in controlling accumulation of chlorophyll and anthocyanins, sensitivity to abscisic acid, and expression of the members of the 12S storage protein gene family. In addition, both FUS3 and LEC1 regulate positively the abundance of the ABI3 protein in the seed.S.X.H.G.
0.8592.4At1g04560839491AWPM-19-like membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
0.8391.4At2g21820816718unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
196.4100.0GSM153927ahg1-1 rep2GSE6638Expression data of germinating ahg1, ahg3 and WT seedling in the presence of ABA
181.0100.0GSM133312RIKEN-LI1BGSE5701AtGenExpress: Basic hormone treatment of seeds
178.8100.0GSM133316RIKEN-LI3BGSE5701AtGenExpress: Basic hormone treatment of seeds
164.299.9GSM133320RIKEN-LI5BGSE5701AtGenExpress: Basic hormone treatment of seeds
146.099.9GSM131708ATGE_84_DGSE5634AtGenExpress: Developmental series (siliques and seeds)
143.099.9GSM133314RIKEN-LI2BGSE5701AtGenExpress: Basic hormone treatment of seeds
133.999.9GSM153929ahg3-1 rep2GSE6638Expression data of germinating ahg1, ahg3 and WT seedling in the presence of ABA
132.999.9GSM10454WT Post-Mature Green Seed 1GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
127.199.9GSM131706ATGE_84_AGSE5634AtGenExpress: Developmental series (siliques and seeds)
121.199.9GSM153925ABA control rep2GSE6638Expression data of germinating ahg1, ahg3 and WT seedling in the presence of ABA
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.031e-240At4g26010828707peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOC.G.S.X.
0.021e-240At3g28510822481AAA-type ATPase family proteinF:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;OMBFPAVC.G.S.X.
0.032e-136At3g50560824220short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAC.G.S.X.
0.027e-134At4g23060828405IQD22 (IQ-domain 22)F:calmodulin binding;P:response to gibberellin stimulus;C:unknown;POMFC.G.S.X.
0.017e-134At4g31230829250protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVAC.G.S.X.
0.027e-134At1g19860838574zinc finger (CCCH-type) family proteinF:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:unknown;PMFOC.G.S.X.
0.023e+032At5g47880834839ERF1-1 (EUKARYOTIC RELEASE FACTOR 1-1)Encodes a eukaryotic release factor 1 homolog. Cosuppression of the gene's expression results affects cell elongation of the inflorescence stem, specifically the internodes, and radial cell division. Expression of the protein is primarily observed in the vascular system and in actively growing and elongating zones.C.G.S.X.
0.043e+032At5g64310836552AGP1 (ARABINOGALACTAN PROTEIN 1)Encodes arabinogalactan-protein (AGP1).C.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.224e-961Glycine maxGmaAffx.69969.1.S1_atBU760782--4e-9At5g66780unknown proteinC.G.S.X.
0.032e-238Hordeum vulgareContig2124_atContig2124--2e-9At4g09320NDPK1C.G.S.X.
0.045e+032Oryza sativaOsAffx.26560.1.S1_at---0C.G.S.X.
0.103e-756Populus trichocarpaPtpAffx.16333.1.S1_s_atDN490058--4e-7At5g66780unknown proteinC.G.S.X.
0.043e+032Triticum aestivumTa.3803.1.A1_atBJ254018--3e-1At5g05710pleckstrin homology (PH) domain-containing proteinC.G.S.X.
0.033e+030Vitis vinifera1619833_atCF515145--1e+0At5g50345-C.G.S.X.
0.031e+032Zea maysZm.17055.1.S1_atCF972499--2e-2At1g12665-C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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