CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g66640

Gene name DAR3 (DA1-RELATED PROTEIN 3)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.36 43.6 At5g66640 836796 DAR3 (DA1-RELATED PROTEIN 3) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMBF S.X. H.G.
0.86 93.1 At1g30135 839893 JAZ8 (JASMONATE-ZIM-DOMAIN PROTEIN 8) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.67 81.6 At2g34600 818025 JAZ7 (JASMONATE-ZIM-DOMAIN PROTEIN 7) F:molecular_function unknown;P:response to jasmonic acid stimulus, response to chitin;C:cellular_component unknown;P S.X. H.G.
0.61 76.7 At4g37770 829933 ACS8 Encodes an auxin inducible ACC synthase. S.X. H.G.
0.46 59.8 At1g33760 840267 AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
514.5 100.0 E-MEXP-807-raw-cel-1173273116
511.5 100.0 E-MEXP-807-raw-cel-1173273088
369.6 100.0 E-MEXP-807-raw-cel-1173273196
311.9 100.0 GSM131325 AtGen_6-3521_Saltstress-Roots-12.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
303.7 100.0 E-MEXP-807-raw-cel-1173273223
297.1 100.0 E-MEXP-807-raw-cel-1173273060
246.7 100.0 E-MEXP-807-raw-cel-1173273170
218.2 100.0 GSM131321 AtGen_6-3421_Saltstress-Roots-6.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
210.2 100.0 GSM131322 AtGen_6-3422_Saltstress-Roots-6.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
185.1 100.0 GSM131329 AtGen_6-3621_Saltstress-Roots-24.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.32 5e-54 212 At5g66610 836793 DAR7 (DA1-RELATED PROTEIN 7) F:zinc ion binding;P:unknown;C:cellular_component unknown;MOPFBV C.G. S.X.
0.15 6e-35 149 At5g17890 831657 DAR4 (DA1-RELATED PROTEIN 4) F:protein binding, zinc ion binding, ATP binding;P:defense response, apoptosis;C:unknown;PMOFBVA C.G. S.X.
0.17 3e-34 147 At5g66630 836795 DAR5 (DA1-RELATED PROTEIN 5) F:zinc ion binding;P:unknown;C:unknown;PMOBF C.G. S.X.
0.30 2e-32 141 At5g66620 836794 DAR6 (DA1-RELATED PROTEIN 6) F:zinc ion binding;P:unknown;C:unknown;MOBFPVA C.G. S.X.
0.06 7e-4 46 At4g36860 829839 zinc ion binding F:zinc ion binding;P:unknown;C:plasma membrane;MOPFB C.G. S.X.
0.02 3e-3 44 At1g18710 838453 AtMYB47 (myb domain protein 47) Member of the R2R3 factor gene family. C.G. S.X.
0.02 1e-2 42 At5g57130 835819 protein binding F:protein binding;P:protein metabolic process;C:cellular_component unknown;PBOAM C.G. S.X.
0.01 1e-2 42 At5g40340 834032 PWWP domain-containing protein F:molecular_function unknown;P:unknown;C:nucleolus;MOFBPVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 7e-8 59 Glycine max Gma.2633.2.S1_at BE329874 - - 5e-45 At4g36860 zinc ion binding C.G. S.X.
0.03 2e-2 40 Hordeum vulgare Contig4156_s_at Contig4156 - - 2e-39 At1g10730 clathrin adaptor complexes medium subunit family protein C.G. S.X.
0.03 2e-5 52 Oryza sativa Os03g0626600 AK066665.1 - The start codon is not identified. 8e-14 At4g36860 zinc ion binding C.G. S.X.
0.03 4e-3 44 Populus trichocarpa Ptp.1190.1.S1_at CK089886 hypothetical protein - 2e-11 At4g36860 zinc ion binding C.G. S.X.
0.03 1e-2 42 Triticum aestivum TaAffx.52006.1.S1_at CA714803 - - 3e+0 At1g01305 unknown protein C.G. S.X.
0.03 5e-5 48 Vitis vinifera 1609571_at BQ795107 hypothetical protein LOC100258119 - 6e-12 At4g36860 zinc ion binding C.G. S.X.
0.03 7e-2 38 Zea mays ZmAffx.1332.1.S1_s_at 11990232-80 - - 1e+0 At3g24465 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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