CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g66630

Gene name DAR5 (DA1-RELATED PROTEIN 5)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.65 79.6 At5g66630 836795 DAR5 (DA1-RELATED PROTEIN 5) F:zinc ion binding;P:unknown;C:unknown;PMOBF S.X. H.G.
0.49 63.5 At1g28370 839733 ERF11 (ERF DOMAIN PROTEIN 11) encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole. S.X. H.G.
0.47 61.2 At1g58420 842211 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.46 59.8 At3g44260 823551 CCR4-NOT transcription complex protein, putative F:ribonuclease activity, nucleic acid binding;P:response to biotic stimulus, response to wounding, RNA modification;C:nucleus;MPOF S.X. H.G.
0.45 58.3 At5g61900 836311 BON1 (BONZAI 1) Encodes a plasma-membrane localized, copine-like protein, which is a member of a newly identified class of calcium-dependent, phospholipid binding proteins that are present in a wide range of organisms. Mutants exhibit temperature-sensitive growth defects and increased hypersensitive response where permissive conditions are low temperature (22 degrees Celsius) and low humidity. Gene is expressed at 22 but not at 28 (restrictive condition) degrees. Lethality of double mutants with BON3 can be partially suppressed by SNC1. Double mutants show defects in development that are genetically separable from hypersensitive/cell death response. S.X. H.G.
0.44 57.2 At5g61600 836281 ethylene-responsive element-binding family protein encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. S.X. H.G.
0.43 55.3 At1g63750 842679 ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding F:protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:defense response, apoptosis;C:unknown;PMBOFVA S.X. H.G.
0.42 53.9 At5g67450 836881 AZF1 (ARABIDOPSIS ZINC-FINGER PROTEIN 1) Encodes zinc-finger protein. mRNA levels are elevated in response to low temperature, cold temperatures and high salt. The protein is localized to the nucleus and acts as a transcriptional repressor. S.X. H.G.
0.42 53.9 At5g04340 830313 ZAT6 (ZINC FINGER OF ARABIDOPSIS THALIANA 6) putative c2h2 zinc finger transcription factor mRNA, S.X. H.G.
0.41 52.4 At1g73500 843685 MKK9 (MAP KINASE KINASE 9) member of MAP Kinase Kinase family. Autophosphorylates and also phosphorylates MPK3 and MPK6. Independently involved in ethylene and calmalexin biosynthesis. Induces transcription of ACS2, ACS6, ERF1, ERF2, ERF5, ERF6, CYP79B2, CYP79B3, CYP71A13 and PAD3. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
219.7 100.0 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
134.9 99.9 E-MEXP-807-raw-cel-1173273116
108.0 99.9 E-MEXP-807-raw-cel-1173273144
106.1 99.9 E-MEXP-807-raw-cel-1173273252
73.9 99.9 E-MEXP-807-raw-cel-1173273060
68.0 99.9 GSM142634 MC002_ATH1_A4.3-dubos-6kc GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
63.1 99.8 E-MEXP-807-raw-cel-1173273223
59.7 99.8 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
59.6 99.8 E-ATMX-31-raw-cel-1516947916
58.1 99.8 E-MEXP-807-raw-cel-1173273170
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.46 0 702 At5g66620 836794 DAR6 (DA1-RELATED PROTEIN 6) F:zinc ion binding;P:unknown;C:unknown;MOBFPVA C.G. S.X.
0.32 7e-39 163 At5g66610 836793 DAR7 (DA1-RELATED PROTEIN 7) F:zinc ion binding;P:unknown;C:cellular_component unknown;MOPFBV C.G. S.X.
0.13 7e-36 153 At5g17890 831657 DAR4 (DA1-RELATED PROTEIN 4) F:protein binding, zinc ion binding, ATP binding;P:defense response, apoptosis;C:unknown;PMOFBVA C.G. S.X.
0.17 4e-34 147 At5g66640 836796 DAR3 (DA1-RELATED PROTEIN 3) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMBF C.G. S.X.
0.05 2e-8 61 At5g66900 836824 disease resistance protein (CC-NBS-LRR class), putative F:protein binding, ATP binding;P:defense response, apoptosis;C:unknown;PMBOFAV C.G. S.X.
0.11 2e-8 61 At4g36860 829839 zinc ion binding F:zinc ion binding;P:unknown;C:plasma membrane;MOPFB C.G. S.X.
0.04 7e-5 50 At5g66910 836825 disease resistance protein (CC-NBS-LRR class), putative F:protein binding, ATP binding;P:defense response, apoptosis;C:endomembrane system;PMBOFA C.G. S.X.
0.01 2e-2 42 At5g07400 830631 forkhead-associated domain-containing protein / FHA domain-containing protein F:hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, phosphoric diester hydrolase activity, zinc ion binding, nucleic acid binding;P:DNA repair;C:nucleus;MFOPB C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 4e-7 57 Glycine max Gma.2633.2.S1_at BE329874 - - 5e-45 At4g36860 zinc ion binding C.G. S.X.
0.04 2e-3 44 Hordeum vulgare Contig20846_at Contig20846 - - 3e-6 At4g36860 zinc ion binding C.G. S.X.
0.03 2e-6 56 Oryza sativa Os03g0626600 AK066665.1 - The start codon is not identified. 8e-14 At4g36860 zinc ion binding C.G. S.X.
0.04 6e-3 44 Populus trichocarpa Ptp.1190.1.S1_at CK089886 hypothetical protein - 2e-11 At4g36860 zinc ion binding C.G. S.X.
0.01 3e-1 38 Triticum aestivum Ta.8636.1.A1_at BQ162154 - - 6e+0 At5g04850 VPS60.2 C.G. S.X.
0.03 8e-5 48 Vitis vinifera 1609571_at BQ795107 hypothetical protein LOC100258119 - 6e-12 At4g36860 zinc ion binding C.G. S.X.
0.01 5e-1 36 Zea mays Zm.15697.1.A1_at CD441154 hypothetical protein LOC100191504 - 3e-2 At5g63150 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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