CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g66510

Gene name GAMMA CA3 (GAMMA CARBONIC ANHYDRASE 3)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.50 65.3 At5g66510 836783 GAMMA CA3 (GAMMA CARBONIC ANHYDRASE 3) Encodes mitochondrial gamma carbonic anhydrase. Component of the NADH dehydrogenase complex. S.X. H.G.
0.80 89.8 At3g02090 821084 mitochondrial processing peptidase beta subunit, putative F:metalloendopeptidase activity, catalytic activity, zinc ion binding, metal ion binding;P:proteolysis;C:in 11 components;BOMFPAV S.X. H.G.
0.75 86.9 At2g20360 816555 binding / catalytic/ coenzyme binding F:coenzyme binding, binding, catalytic activity;P:response to salt stress;C:mitochondrion, respiratory chain complex I, membrane;BOMFPA S.X. H.G.
0.75 86.9 At5g37510 833729 EMB1467 (embryo defective 1467) Encodes a subunit of the 400 kDa subcomplex of the mitochondrial NADH dehydrogenase (complex I). The protein has been isolated in the male gametophyte. S.X. H.G.
0.57 73.8 At3g27240 822343 cytochrome c1, putative F:electron carrier activity, iron ion binding, heme binding, electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex activity;P:unknown;C:in 6 components;OBMFP S.X. H.G.
0.44 57.2 At1g47260 841129 GAMMA CA2 (GAMMA CARBONIC ANHYDRASE 2) Encodes mitochondrial gamma carbonic anhydrase. Component of the NADH dehydrogenase complex. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.4 98.6 GSM133306 RIKEN-NAKABAYASHI2B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
6.0 98.5 GSM133268 RIKEN-GODA5B-6 GSE5696 AtGenExpress: Effect of brassinosteroids in seedlings
5.6 98.4 GSM142754 MJ001_ATH1_A5-jones-WT-Rep3 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
5.6 98.4 GSM142735 DH001_ATH1_A2-BCP1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
5.6 98.4 GSM142751 MJ001_ATH1_A2-jones-WT2 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
5.5 98.3 GSM142750 MJ001_ATH1_A1-jones-WT1 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
5.3 98.3 GSM133266 RIKEN-GODA4B-6 GSE5696 AtGenExpress: Effect of brassinosteroids in seedlings
5.3 98.3 E-MEXP-711-raw-cel-1563002537
5.1 98.2 GSM133310 RIKEN-NAKABAYASHI5B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
5.0 98.1 GSM27365 lec1-1 Root GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.34 5e-25 115 At1g19580 838545 GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1) Encodes mitochondrial gamma carbonic anhydrase. Component of the NADH dehydrogenase complex. C.G. S.X.
0.32 7e-9 61 At1g47260 841129 GAMMA CA2 (GAMMA CARBONIC ANHYDRASE 2) Encodes mitochondrial gamma carbonic anhydrase. Component of the NADH dehydrogenase complex. C.G. S.X.
0.02 4e-1 36 At5g39050 833897 transferase/ transferase, transferring acyl groups other than amino-acyl groups F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO C.G. S.X.
0.01 4e-1 36 At5g62730 836394 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;BPOMF C.G. S.X.
0.02 4e-1 36 At2g33300 817893 - F:molecular_function unknown;P:transcription;C:nucleus;PO C.G. S.X.
0.01 4e-1 36 At2g19240 816441 RabGAP/TBC domain-containing protein F:RAB GTPase activator activity;P:regulation of Rab GTPase activity;C:intracellular, chloroplast;MOFPB C.G. S.X.
0.01 4e-1 36 At1g13030 837860 sphere organelles protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVA C.G. S.X.
0.01 2e+0 34 At5g38340 833816 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, endomembrane system;PMBOFAV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.25 8e-31 135 Glycine max Gma.2150.1.S1_at CD401414 - - 3e-21 At1g19580 GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1) C.G. S.X.
0.25 5e-14 77 Hordeum vulgare Contig3102_at Contig3102 - - 2e-13 At5g66510 GAMMA CA3 (GAMMA CARBONIC ANHYDRASE 3) C.G. S.X.
0.16 3e-6 54 Oryza sativa Os01g0283100 AK071713.1 - Ferripyochelin-binding protein-like 1e-35 At1g19580 GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1) C.G. S.X.
0.44 1e-85 317 Populus trichocarpa PtpAffx.43592.1.S1_at CV243155 - - 1e-85 At5g66510 GAMMA CA3 (GAMMA CARBONIC ANHYDRASE 3) C.G. S.X.
0.21 1e-7 57 Triticum aestivum Ta.3097.1.S1_at CD937885 - - 2e-7 At5g66510 GAMMA CA3 (GAMMA CARBONIC ANHYDRASE 3) C.G. S.X.
0.29 2e-34 145 Vitis vinifera 1608449_at CB349956 hypothetical protein LOC100247109 - 6e-72 At1g19580 GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1) C.G. S.X.
0.29 3e-9 61 Zea mays Zm.15626.1.S1_at CA404507 - - 1e-8 At5g66510 GAMMA CA3 (GAMMA CARBONIC ANHYDRASE 3) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0009853 A light-dependent catabolic process occurring concomitantly with photosynthesis in plants (especially C3 plants) whereby dioxygen (O2) is consumed and carbon dioxide (CO2) is evolved. The substrate is glycolate formed in large quantities in chloroplasts from 2-phosphoglycolate generated from ribulose 1,5-bisphosphate by the action of ribulose-bisphosphate carboxylase; the glycolate enters the peroxisomes where it is converted by glycolate oxidase to glyoxylate which undergoes transamination to glycine. This then passes into the mitochondria where it is decarboxylated forming one molecule of serine for every two molecules of glycine. This pathway also exists in photosynthetic bacteria.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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