CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g66470

Gene name GTP binding / RNA binding

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g66470 836779 GTP binding / RNA binding F:RNA binding, GTP binding;P:unknown;C:chloroplast;BOMAPF S.X. H.G.
0.79 89.1 At3g62910 825466 APG3 (ALBINO AND PALE GREEN) Isolated in a screen for chloroplast development mutants. Pale green, albino seedlings arrest early in seedling development. S.X. H.G.
0.73 85.5 At5g55220 835615 trigger factor type chaperone family protein F:peptidyl-prolyl cis-trans isomerase activity;P:protein folding, protein transport;C:chloroplast, chloroplast stroma, chloroplast envelope;BOMPFV S.X. H.G.
0.73 85.5 At5g03940 830273 CPSRP54 (CHLOROPLAST SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT) mutant has Yellow first leaves; Chloroplast Signal Recognition Particle Subunit S.X. H.G.
0.72 84.8 At2g24060 816940 translation initiation factor 3 (IF-3) family protein F:translation initiation factor activity;P:translational initiation;C:chloroplast;OBMPFVA S.X. H.G.
0.71 84.2 At5g10690 830933 pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing protein F:unknown;P:biological_process unknown;C:chloroplast;POMFBA S.X. H.G.
0.69 82.9 At2g37660 818343 binding / catalytic/ coenzyme binding F:coenzyme binding, binding, catalytic activity;P:defense response to bacterium;C:thylakoid, apoplast, chloroplast stroma, chloroplast;BOPFAM S.X. H.G.
0.66 80.1 At2g47940 819406 DEGP2 Encodes DegP2 protease (DEGP2); nuclear gene for chloroplast product. S.X. H.G.
0.66 80.1 At5g18660 831984 PCB2 (PALE-GREEN AND CHLOROPHYLL B REDUCED 2) Encodes a protein with 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity. Mutants accumulate divinyl chlorophyll rather than monovinyl chlorophyll. S.X. H.G.
0.65 79.6 At5g63310 836451 NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2) Maintains intracellular dNTP levels except ATP. Plays a role in response to oxidative stress and UV. Involved in phytochrome-mediated light signaling. Participates in auxin-regulated processes, partly through the modulation of auxin transport. H-bonding with His-197 inside the nucleotide-binding pocket is critical for NDPK2 functioning. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
20.8 99.6 E-ATMX-25-raw-cel-1441077420
20.4 99.6 GSM133768 Lindsey_1-20_torpedo-basal_Rep5_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
16.5 99.5 E-MEXP-509-raw-cel-829148420
15.3 99.4 GSM183513 MYB29_OE_rep1 GSE7570 ATR1_like_Clade_OE_and_miR
13.2 99.4 E-ATMX-27-raw-cel-1441080588
13.1 99.4 GSM183514 MYB29_OE_rep2 GSE7570 ATR1_like_Clade_OE_and_miR
13.1 99.4 GSM183511 MYB76_OE_rep1 GSE7570 ATR1_like_Clade_OE_and_miR
13.0 99.4 GSM318331 EL_14DAS_2 GSE12676 Arabidopsis thaliana Ler developmental series
12.9 99.3 E-MEXP-1100-raw-cel-1378752260
12.5 99.3 E-ATMX-27-raw-cel-1441080572
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 4e-2 40 At4g19010 827639 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein F:4-coumarate-CoA ligase activity;P:metabolic process;C:unknown;BOFMPAV C.G. S.X.
0.01 6e-1 36 At3g51560 824319 ATP binding / protein binding / transmembrane receptor F:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFVA C.G. S.X.
0.03 6e-1 36 At2g26930 817234 ATCDPMEK (4-(CYTIDINE 5'-PHOSPHO)-2-C-METHYL-D-ERITHRITOL KINASE) Encodes a 4-(cytidine 5'-phospho)-2-C-methyl-D-erithritol kinase. C.G. S.X.
0.01 6e-1 36 At1g63670 842671 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPBFAV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.35 4e-43 176 Glycine max GmaAffx.1815.2.S1_at AW201478 - - 1e-43 At5g66470 GTP binding / RNA binding C.G. S.X.
0.02 1e+0 34 Hordeum vulgare HK05M14r_at HK05M14r - - 6e+0 At1g15950 CCR1 (CINNAMOYL COA REDUCTASE 1) C.G. S.X.
0.19 4e-13 77 Oryza sativa Os05g0567300 AK112068.1 - GTP-binding protein Era family protein 2e-13 At5g66470 GTP binding / RNA binding C.G. S.X.
0.57 6e-82 305 Populus trichocarpa PtpAffx.207374.1.S1_at pmrna14628 hypothetical protein - 4e-82 At5g66470 GTP binding / RNA binding C.G. S.X.
0.02 7e-1 36 Triticum aestivum TaAffx.113000.1.S1_at CA619022 - - 4e+0 At5g01390 DNAJ heat shock protein, putative C.G. S.X.
0.02 7e-1 34 Vitis vinifera 1616254_a_at CF210000 hypothetical protein LOC100261951 - 1e+0 At3g52800 zinc finger (AN1-like) family protein C.G. S.X.
0.02 4e+0 32 Zea mays Zm.13056.1.A1_at CA403911 hypothetical protein LOC100273702 - 3e-1 At5g40540 protein kinase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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