Gene omics information

Query gene ID At5g66460
Gene name (1-4)-beta-mannan endohydrolase, putative
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4659.8At5g66460836778(1-4)-beta-mannan endohydrolase, putativeF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFBOAS.X.H.G.
0.2522.6At3g03450821251RGL2 (RGA-LIKE 2)Encodes a DELLA protein, a member of the GRAS superfamily of putative transcription factors. DELLA proteins restrain the cell proliferation and expansion that drives plant growth. Negative regulator of the response to GA in controlling seed germination. GA triggers the degradation of RGL2 protein in a process blocked by both proteasome inhibitors and serine/threonine phosphatase inhibitors. The protein undergoes degradation in response to GA via the 26S proteasome. RGL2 may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Rapidly degraded in response to GA. Regulates GA-promoted seed germination. Involved in flower and fruit development.S.X.H.G.
0.092.8At1g75390843875AtbZIP44 (Arabidopsis thaliana basic leucine-zipper 44)F:transcription factor activity, protein heterodimerization activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, chloroplast;PFOMS.X.H.G.
0.071.9At1g04920839382ATSPS3F (sucrose phosphate synthase 3F)Encodes a protein with putative sucrose-phosphate synthase activity.S.X.H.G.
0.030.6At5g66330836765leucine-rich repeat family proteinF:protein binding;P:signal transduction;C:endomembrane system;PMOBFAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
134.399.9GSM10480lec1-1 Cotyledon Stage Seed 2GSE1051Seed development in LEAFY COTYLEDON1 mutants
133.499.9GSM10448WT Cotyledon Stage Seed 1GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
124.799.9GSM10479lec1-1 Cotyledon Stage Seed 1GSE1051Seed development in LEAFY COTYLEDON1 mutants
116.499.9GSM133309RIKEN-NAKABAYASHI4BGSE5700AtGenExpress: Effect of ABA during seed imbibition
76.199.9GSM147963WT Globular Stage Seed 1GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
64.699.8GSM147965lec1-1 Globular Stage Seed 1GSE1051Seed development in LEAFY COTYLEDON1 mutants
59.999.8GSM10449WT Cotyledon Stage Seed 2GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
57.499.8GSM134304Penfield_1-6_endosperm-ABA_Rep3_ATH1GSE5751The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
55.799.8GSM133308RIKEN-NAKABAYASHI4AGSE5700AtGenExpress: Effect of ABA during seed imbibition
55.799.8GSM147964WT Globular Stage Seed 2GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.259e-31135At3g10890820259(1-4)-beta-mannan endohydrolase, putativeF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFBOAC.G.S.X.
0.163e-1893At3g10900820260(1-4)-beta-mannan endohydrolase, putativeF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFBOAC.G.S.X.
0.238e-1685At3g30540822768(1-4)-beta-mannan endohydrolase familyF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFBOAC.G.S.X.
0.037e-756At5g01930831699(1-4)-beta-mannan endohydrolase, putativeF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFBOAC.G.S.X.
0.014e-240At2g20710816599pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:mitochondrion;POFMBC.G.S.X.
0.012e-138At5g17700831637MATE efflux family proteinF:drug transporter activity, antiporter activity, transporter activity;P:multidrug transport;C:membrane;BPOFMAC.G.S.X.
0.022e-138At4g00610827994DNA-binding storekeeper protein-relatedF:transcription regulator activity;P:biological_process unknown;C:chloroplast;MOFPBVC.G.S.X.
0.023e+034At5g66550836787Maf family proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOMPFAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.116e-550Glycine maxGmaAffx.74847.1.S1_atBG507699--2e-5At5g66460(1-4)-beta-mannan endohydrolase, putativeC.G.S.X.
0.053e-136Hordeum vulgareContig6433_atContig6433--5e-1At5g66460(1-4)-beta-mannan endohydrolase, putativeC.G.S.X.
0.043e-138Oryza sativaOs02g07669009630.m05210-Glycoside hydrolase, family 5 protein6e-4At1g02310glycosyl hydrolase family protein 5 / cellulase family protein / (1-4)-beta-mannan endohydrolase, putativeC.G.S.X.
0.131e-1275Populus trichocarpaPtpAffx.26414.1.S1_atCV261204hypothetical protein-8e-13At5g66460(1-4)-beta-mannan endohydrolase, putativeC.G.S.X.
0.093e-344Triticum aestivumTa.9612.1.S1_atCD886109--4e-3At5g66460(1-4)-beta-mannan endohydrolase, putativeC.G.S.X.
0.135e-1167Vitis vinifera1612185_atCB008768hypothetical protein LOC100245556-3e-10At5g66460(1-4)-beta-mannan endohydrolase, putativeC.G.S.X.
0.024e+032Zea maysZm.2041.2.A1_atH35882Hypothetical protein LOC100191381-3e+0At5g37870seven in absentia (SINA) family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0005975The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00412Link to KaPPA-View 4Glycoside Hydrolase
00435Link to KaPPA-View 4Cellulose degradation



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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