CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g66370

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g66370 836769 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POF S.X. H.G.
0.91 95.6 At5g14560 831307 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.89 94.6 At1g54880 841927 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.89 94.6 At2g40440 818638 BTB/POZ domain-containing protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;PMO S.X. H.G.
0.88 94.0 At2g32050 817765 cell cycle control protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP S.X. H.G.
0.87 93.5 At3g57900 824959 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.86 93.1 At5g18160 831934 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.86 93.1 At4g19570 827699 DNAJ heat shock N-terminal domain-containing protein F:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMPFVA S.X. H.G.
0.86 93.1 At2g30430 817594 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.86 93.1 At4g02970 828121 AT7SL-1 (Arabidopsis 7SL RNA 1) Signal recognition particle. Type 4 of RNA polymerase III dependent genes. S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
420.5 100.0 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
387.6 100.0 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
344.9 100.0 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
322.9 100.0 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
313.7 100.0 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
292.7 100.0 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
283.1 100.0 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
278.6 100.0 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
272.0 100.0 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
270.5 100.0 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.28 2e-7 56 At3g51020 824266 unknown protein F:unknown;P:unknown;C:cellular_component unknown;PM C.G. S.X.
0.02 6e-2 38 At5g16320 831493 FRL1 (FRIGIDA LIKE 1) family member of FRI-related genes that is required for the winter-annual habit. Genbank accession BK004884 C.G. S.X.
0.01 9e-1 34 At1g33390 840232 helicase domain-containing protein F:helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;BMOFPV C.G. S.X.
0.02 9e-1 34 At1g41820 840790 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBPF C.G. S.X.
0.01 3e+0 32 At5g47260 834773 ATP binding / GTP binding / nucleoside-triphosphatase/ nucleotide binding F:nucleoside-triphosphatase activity, GTP binding, nucleotide binding, ATP binding;P:N-terminal protein myristoylation, defense response, apoptosis;C:cellular_component unknown;PMBOFA C.G. S.X.
0.01 3e+0 32 At4g02410 828032 lectin protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.02 3e+0 32 At4g29130 829034 HXK1 (HEXOKINASE 1) Encodes a hexokinase (HXK1) in the plant glucose-signaling network. Functions as a glucose sensor to interrelate nutrient, light, and hormone signaling networks for controlling growth and development in response to the changing environment. C.G. S.X.
0.01 3e+0 32 At3g52080 824371 chx28 (cation/hydrogen exchanger 28) encodes a cation:proton exchanger expressed in pollen C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 5e+0 32 Glycine max Gma.13545.1.A1_at CD400233 - - 3e+0 At5g66370 unknown protein C.G. S.X.
0.03 7e+0 30 Hordeum vulgare Contig14590_at Contig14590 - - 2e-2 At3g11810 unknown protein C.G. S.X.
0.02 7e+0 32 Oryza sativa Os05g0341700 9633.m02504 - - 1e-1 At2g35270 DNA-binding protein-related C.G. S.X.
0.04 1e+0 34 Populus trichocarpa PtpAffx.215422.1.S1_at pmrna29591 hypothetical protein - 2e-1 At1g26210 unknown protein C.G. S.X.
0.04 4e+0 32 Triticum aestivum Ta.28363.1.A1_x_at BG904047 - - 1e-1 At5g64040 PSAN C.G. S.X.
0.03 4e+0 30 Vitis vinifera 1616012_at CF413967 hypothetical protein LOC100263474 - 8e-1 At5g03400 unknown protein C.G. S.X.
0.04 2e+1 28 Zea mays ZmAffx.161.1.A1_at AI668163 hypothetical protein LOC100193378 - 3e+0 At4g17560 ribosomal protein L19 family protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage