Gene omics information

Query gene ID At5g66210
Gene name CPK28
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4050.8At5g66210836753CPK28member of Calcium Dependent Protein KinaseS.X.H.G.
0.7788.0At4g39640830118GGT1 (GAMMA-GLUTAMYL TRANSPEPTIDASE 1)The gene encodes a gamma-glutamyltransferase (AKA gamma-glutamyl transpeptidase, EC that is located in vascular tissues (predominantly phloem) of leaves and is involved in the degradation of glutathione. The encoded enzyme also mitigates oxidative stress by metabolizing GSSG (oxidized form of GSH - glutathione) in the apoplast.S.X.H.G.
0.7586.9At4g34150829563C2 domain-containing proteinF:unknown;P:response to cold;C:unknown;MPFOBVAS.X.H.G.
0.6781.6At3g09830820141protein kinase, putativeF:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAS.X.H.G.
0.6378.1At3g52400824405SYP122 (SYNTAXIN OF PLANTS 122)syntaxin protein, involved in the negative regulation of defense pathways such as programmed cell death, salicylic acid signalling pathway, jasmonic acid signalling pathwayS.X.H.G.
0.5974.7At1g55450841992embryo-abundant protein-relatedF:methyltransferase activity;P:response to salt stress;C:unknown;BPFMOAS.X.H.G.
0.5469.5At1g29690839846CAD1 (constitutively activated cell death 1)Encodes a protein containing a domain with significant homology to the MACPF (membrane attack complex and perforin) domain of complements and perforin proteins that are involved in innate immunity in animals. Transgenic cad1-1 mutant plants show lesions seen in the hypersensitive response, as well as a spontaneous activation of expression of pathogenesis-related genes and leading to a 32-fold increase in salicylic acid (SA). CAD1 is postulated to act as a negative regulator controlling SA-mediated pathway of programmed cell death in plant immunity.S.X.H.G.
0.4659.8At3g45640823706ATMPK3 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE 3)Encodes a mitogen-activated kinase whose mRNA levels increase in response to touch, cold, salinity stress and chitin oligomers.Also functions in ovule development. Heterozygous MPK3 mutants in a homozygous MPK6 background are female sterile due to defects in integument development. MPK3 can be dephosphorylated by MKP2 in vitro.S.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
74.099.9GSM39212RRE2_Chitin2GSE2169rre1 and rre2 mutants
69.299.9GSM39197RRE1_Chitin3GSE2169rre1 and rre2 mutants
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.469e-87321At2g17890816299CPK16member of Calcium Dependent Protein KinaseC.G.S.X.
0.273e-1997At4g36070829763CPK18member of Calcium Dependent Protein KinaseC.G.S.X.
0.038e-446At5g19450832065CDPK19 (CALCIUM-DEPENDENT PROTEIN KINASE 19)calcium-dependent protein kinase (CDPK19) mRNA, completeC.G.S.X.
0.023e-344At4g23650828465CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)Encodes calcium dependent protein kinase 3 (CPK3), a member of the Arabidopsis CDPK gene family. CDPKs contain an intrinsic Ca2+-activation domain with four EF hand Ca2+-binding sites. CDPKs protein kinases have been proposed to function in multiple plant signal transduction pathways downstream of [Ca2+]cyt elevations, thus transducing various physiological responses. CPK3 is expressed in both guard cells and mesophyll cells. Functions in guard cell ion channel regulation. ABA and Ca(2+) activation of slow-type anion channels and, interestingly, ABA activation of plasma membrane Ca(2+)-permeable channels were impaired in independent alleles of single and double cpk3cpk6 mutant guard cells. Furthermore, ABA- and Ca(2+)-induced stomatal closing were partially impaired in these cpk3cpk6 mutant alleles. CPK6 is also a member of the Arabidopsis CDPK family.C.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.252e-26121Glycine maxGma.17453.2.S1_atBU964441--6e-11At4g36070CPK18C.G.S.X.
0.315e-1685Hordeum vulgareContig11154_atContig11154--1e-15At5g66210CPK28C.G.S.X.
0.173e-1171Oryza sativaOs07g0409900AF194414.2-Protein kinase domain containing protein6e-33At2g17890CPK16C.G.S.X.
0.122e-1481Populus trichocarpaPtpAffx.146636.1.A1_atCV268823calcium dependent protein kinase 16-9e-15At5g66210CPK28C.G.S.X.
0.101e-242Triticum aestivumTa.5515.1.S1_atCA681683Calcium-dependent protein kinase-4e-3At5g66210CPK28C.G.S.X.
0.205e-21101Vitis vinifera1608587_atCD799705hypothetical protein LOC100248850-9e-21At5g66210CPK28C.G.S.X.
0.025e+032Zea maysZmAffx.793.1.A1_atAI770322--8e-1At1g64890integral membrane transporter family proteinC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0006468The process of introducing a phosphate group on to a protein.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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