CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g66170

Gene name -

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.25 22.6 At5g66170 836749 - F:molecular_function unknown;P:aging;C:cellular_component unknown;PBOA S.X. H.G.
0.73 85.5 At4g37220 829876 stress-responsive protein, putative F:molecular_function unknown;P:response to fructose stimulus, response to sucrose stimulus, response to glucose stimulus, response to stress;C:cellular_component unknown;P S.X. H.G.
0.40 50.8 At1g02340 839300 HFR1 (LONG HYPOCOTYL IN FAR-RED) Encodes a light-inducible, nuclear bHLH protein involved in phytochrome signaling. Mutants exhibit a long-hypocotyl phenotype only under far-red light but not under red light and are defective in other phytochrome A-related responses. Mutants also show blue light response defects. HFR1 interacts with COP1, co-localizes to the nuclear specks and is ubiquinated by COP1. S.X. H.G.
0.21 15.8 At2g43050 818907 ATPMEPCRD F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFM S.X. H.G.
0.16 8.8 At5g47450 834794 AtTIP2 Tonoplast intrinsic protein, transports ammonium (NH3) and methylammonium across the tonoplast membrane, gene expression shows diurnal regulation and is upregulated by ammonium (NH3). S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
83.6 99.9 GSM134301 Penfield_1-3_endosperm-control_Rep3_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
74.9 99.9 E-MEXP-1112-raw-cel-1590665793
69.5 99.9 E-MEXP-1112-raw-cel-1590665325
55.1 99.8 E-MEXP-1112-raw-cel-1590665377
52.3 99.8 E-MEXP-1112-raw-cel-1590665845
41.0 99.8 E-ATMX-31-raw-cel-1516948001
41.0 99.8 GSM311293 Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
39.4 99.8 GSM131214 AtGen_D-48_3-WS_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
38.4 99.8 GSM311294 Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
38.0 99.8 GSM134306 Penfield_1-8_endosperm-PAC_Rep2_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.03 5e-2 38 At5g06420 830530 zinc finger (CCCH-type/C3HC4-type RING finger) family protein F:protein binding, zinc ion binding, nucleic acid binding;P:unknown;C:membrane;MFOPB C.G. S.X.
0.03 5e-2 38 At1g01350 838964 nucleic acid binding / protein binding / zinc ion binding F:protein binding, zinc ion binding, nucleic acid binding;P:unknown;C:unknown;MFOPB C.G. S.X.
0.02 2e-1 36 At4g00230 827949 XSP1 (xylem serine peptidase 1) F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:cell wall, plant-type cell wall;BPOFMA C.G. S.X.
0.02 8e-1 34 At3g25590 822146 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFB C.G. S.X.
0.02 3e+0 32 At5g47720 834823 acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putative F:acetyl-CoA C-acetyltransferase activity, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFAP C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 7e-2 38 Glycine max HgAffx.18476.1.S1_at AF344866.1 - - 1e-1 At5g66170 - C.G. S.X.
0.06 2e+0 32 Hordeum vulgare HU09K22u_s_at HU09K22u - - 2e+0 At5g66170 - C.G. S.X.
0.04 1e-1 38 Oryza sativa Os04g0225800 9632.m01378 - - 8e-2 At5g66170 - C.G. S.X.
0.04 1e+0 34 Populus trichocarpa PtpAffx.46365.1.A1_at CV251026 SAUR family protein - 4e-13 At4g34760 auxin-responsive family protein C.G. S.X.
0.03 3e+0 32 Triticum aestivum TaAffx.117140.1.S1_at BQ609576 - - 4e+0 At5g66170 - C.G. S.X.
0.04 9e-1 32 Vitis vinifera 1612996_at CD798919 - - 5e-2 At4g11600 ATGPX6 (GLUTATHIONE PEROXIDASE 6) C.G. S.X.
0.03 1e+0 32 Zea mays Zm.9659.1.A1_at BM350799 - - 4e-1 At1g69510 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0007568 The inherent decline over time, from the optimal fertility and viability of early maturity, that may precede death and may be preceded by other indications, such as sterility.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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