CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g66140

Gene name PAD2 (PROTEASOME ALPHA SUBUNIT D 2)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.19 12.7 At5g66140 836746 PAD2 (PROTEASOME ALPHA SUBUNIT D 2) Encodes alpha5 subunit of 20S proteosome complex involved in protein degradation. S.X. H.G.
0.40 50.8 At3g11270 820298 MEE34 (maternal effect embryo arrest 34) F:molecular_function unknown;P:embryonic development ending in seed dormancy, protein catabolic process, ubiquitin-dependent protein catabolic process;C:nucleus, proteasome regulatory particle, lid subcomplex;MFPO S.X. H.G.
0.25 22.6 At5g23540 832420 26S proteasome regulatory subunit, putative F:unknown;P:response to salt stress, protein catabolic process, ubiquitin-dependent protein catabolic process;C:nucleus, proteasome regulatory particle, lid subcomplex;MFPO S.X. H.G.
0.19 12.7 At5g40580 834056 PBB2 Encodes 20S proteasome beta subunit PBB2 (PBB2). S.X. H.G.
0.13 5.8 At1g16470 838217 PAB1 (PROTEASOME SUBUNIT PAB1) Encodes 20S proteasome subunit PAB1 (PAB1). S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
89.3 99.9 E-MEXP-739-raw-cel-1099467393
75.7 99.9 E-MEXP-739-raw-cel-1099467384
63.6 99.8 E-MEXP-739-raw-cel-1099467375
53.1 99.8 GSM134305 Penfield_1-7_endosperm-PAC_Rep1_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
48.6 99.8 E-MEXP-739-raw-cel-1099467321
48.0 99.8 GSM134306 Penfield_1-8_endosperm-PAC_Rep2_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
46.9 99.8 E-MEXP-739-raw-cel-1099467339
44.5 99.8 GSM134307 Penfield_1-9_endosperm-PAC_Rep3_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
42.3 99.8 GSM134304 Penfield_1-6_endosperm-ABA_Rep3_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
24.9 99.6 GSM134303 Penfield_1-5_endosperm-ABA_Rep2_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.84 3e-165 581 At3g51260 824289 PAD1 (20s proteasome alpha subunit pad1) 20S proteosomal alpha subunits. Interacts with SnRK, SKP1/ASK1 during proteasomal binding of an SCF ubiquitin ligase. C.G. S.X.
0.02 4e-1 36 At2g24060 816940 translation initiation factor 3 (IF-3) family protein F:translation initiation factor activity;P:translational initiation;C:chloroplast;OBMPFVA C.G. S.X.
0.01 2e+0 34 At5g01170 831732 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFVB C.G. S.X.
0.02 2e+0 34 At3g53400 824508 - F:molecular_function unknown;P:biological_process unknown;C:unknown;PO C.G. S.X.
0.02 2e+0 34 At2g40330 818626 Bet v I allergen family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PBO C.G. S.X.
0.02 6e+0 32 At5g53870 835468 plastocyanin-like domain-containing protein F:electron carrier activity, copper ion binding;P:unknown;C:plasma membrane, anchored to membrane;MFOBPVA C.G. S.X.
0.01 6e+0 32 At5g26920 832750 CBP60G (CAM-BINDING PROTEIN 60-LIKE.G) Encodes a calmodulin-binding protein CBP60g (calmodulin binding protein 60-like.g). The calmodulin-binding domain is located near the N-terminus; calmodulin binding is dependent on Ca(2+). Inducible by both bacterial pathogen and MAMP (microbe-associated molecular pattern) treatments. Bacterial growth is enhanced in cbp60g mutants. cbp60g mutants also show defects in salicylic acid (SA) accumulation and SA signaling. C.G. S.X.
0.01 6e+0 32 At5g10540 830919 peptidase M3 family protein / thimet oligopeptidase family protein F:metalloendopeptidase activity;P:response to cadmium ion, proteolysis;C:cytosol, apoplast, chloroplast;BOMFPA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.56 2e-37 157 Glycine max Gma.2587.1.S1_at CD404912 - - 2e-37 At5g66140 PAD2 (PROTEASOME ALPHA SUBUNIT D 2) C.G. S.X.
0.33 2e-32 139 Hordeum vulgare Contig2852_at Contig2852 - - 5e-32 At5g66140 PAD2 (PROTEASOME ALPHA SUBUNIT D 2) C.G. S.X.
0.36 1e-42 174 Oryza sativa Os09g0538200 AB032061.1 - Proteasome subunit alpha type 7 (EC 3.4.25.1) (20Sproteasome alpha subunit D) (20S proteasome subunitalpha-4) 1e-42 At5g66140 PAD2 (PROTEASOME ALPHA SUBUNIT D 2) C.G. S.X.
0.47 3e-30 133 Populus trichocarpa PtpAffx.1120.1.S1_at CV225573 hypothetical protein - 6e-44 At3g51260 PAD1 (20s proteasome alpha subunit pad1) C.G. S.X.
0.25 2e-33 143 Triticum aestivum Ta.28267.1.S1_a_at CD879804 - - 3e-33 At5g66140 PAD2 (PROTEASOME ALPHA SUBUNIT D 2) C.G. S.X.
0.63 3e-73 274 Vitis vinifera 1614080_at CF517252 hypothetical protein LOC100262480 - 1e-85 At3g51260 PAD1 (20s proteasome alpha subunit pad1) C.G. S.X.
0.37 6e-32 137 Zea mays Zm.4866.1.S1_at AY103887.1 20S proteasome alpha 4 subunit - 5e-26 At3g51260 PAD1 (20s proteasome alpha subunit pad1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0006511 The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
03050 Proteasome
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