CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g66110

Gene name metal ion binding

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g66110 836743 metal ion binding F:metal ion binding;P:metal ion transport;C:plasma membrane;PFM S.X. H.G.
0.92 96.0 At5g45310 834567 unknown protein F:unknown;P:unknown;C:endomembrane system;OMVBFPA S.X. H.G.
0.89 94.6 At3g61040 825276 CYP76C7 encodes a protein with cytochrome P450 domain S.X. H.G.
0.87 93.5 At4g02280 828081 SUS3 (sucrose synthase 3) Encodes a protein with sucrose synthase activity (SUS3). S.X. H.G.
0.87 93.5 At5g43770 834399 proline-rich family protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MBPOFVA S.X. H.G.
0.87 93.5 At1g75490 843885 DNA binding / transcription factor encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought. S.X. H.G.
0.86 93.1 At3g22500 821821 ATECP31 late embryogenesis abundant (LEA) protein S.X. H.G.
0.85 92.4 At5g60760 836197 2-phosphoglycerate kinase-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPBAFV S.X. H.G.
0.85 92.4 At5g55750 835669 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFBVA S.X. H.G.
0.85 92.4 At2g42000 818800 plant EC metallothionein-like family 15 protein F:zinc ion binding;P:biological_process unknown;C:unknown;PMOBF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
839.0 100.0 GSM133303 RIKEN-NAKABAYASHI1A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
337.9 100.0 GSM133304 RIKEN-NAKABAYASHI1B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
304.3 100.0 GSM131706 ATGE_84_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
210.6 100.0 GSM131703 ATGE_83_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
205.3 100.0 GSM131708 ATGE_84_D GSE5634 AtGenExpress: Developmental series (siliques and seeds)
199.0 100.0 GSM131705 ATGE_83_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
175.9 100.0 GSM10454 WT Post-Mature Green Seed 1 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
175.9 100.0 GSM133117 RIKEN-YAMAUCHI1A GSE5687 AtGenExpress: Different temperature treatment of seeds
172.2 100.0 GSM131707 ATGE_84_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
152.9 99.9 GSM131701 ATGE_82_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.14 4e-9 61 At4g38580 830015 ATFP6 (FARNESYLATED PROTEIN 6) putative farnesylated protein (At4g38580) mRNA, complete C.G. S.X.
0.03 5e-2 38 At3g26710 822283 CCB1 (COFACTOR ASSEMBLY OF COMPLEX C) F:molecular_function unknown;P:cytochrome b6f complex assembly;C:chloroplast;OBP C.G. S.X.
0.01 8e-1 34 At4g12460 826858 ORP2B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2B) F:oxysterol binding;P:steroid metabolic process;C:cellular_component unknown;MFOP C.G. S.X.
0.01 8e-1 34 At3g23900 821973 RNA recognition motif (RRM)-containing protein F:nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVA C.G. S.X.
0.03 8e-1 34 At1g01560 839523 ATMPK11 member of MAP Kinase C.G. S.X.
0.05 8e-1 34 At1g64105 842715 ANAC027 (Arabidopsis NAC domain containing protein 27) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.28 1e-12 73 Glycine max Gma.1397.1.S1_a_at CD408242 - - 6e-24 At4g38580 ATFP6 (FARNESYLATED PROTEIN 6) C.G. S.X.
0.11 5e-10 63 Hordeum vulgare Contig11751_at Contig11751 - - 1e-4 At4g38580 ATFP6 (FARNESYLATED PROTEIN 6) C.G. S.X.
0.19 1e-13 77 Oryza sativa Os03g0156600 AK105367.1 - Heavy metal transport/detoxification proteindomain containing protein 1e-13 At5g66110 metal ion binding C.G. S.X.
0.14 2e-5 50 Populus trichocarpa PtpAffx.221958.1.S1_at pmrna39091 hypothetical protein - 2e-5 At5g66110 metal ion binding C.G. S.X.
0.11 2e-4 46 Triticum aestivum Ta.4941.1.S1_at BT009077.1 - - 5e-4 At5g66110 metal ion binding C.G. S.X.
0.14 3e-16 83 Vitis vinifera 1608337_at BQ792532 hypothetical protein LOC100260571 - 2e-15 At5g66110 metal ion binding C.G. S.X.
0.20 6e-9 59 Zea mays Zm.10202.1.A1_at AY112463.1 farnesylated protein 1 - 3e-8 At5g66110 metal ion binding C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0030001 The directed movement of metal ions, any metal ion with an electric charge, into, out of, within or between cells.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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