CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g65950

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.57 73.8 At5g65950 836725 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP S.X. H.G.
0.75 86.9 At4g24840 828587 - F:molecular_function unknown;P:protein transport, Golgi organization;C:vacuole;MFOP S.X. H.G.
0.71 84.2 At5g63840 836504 RSW3 (RADIAL SWELLING 3) radial swelling mutant shown to be specifically impaired in cellulose production. Encodes the alpha-subunit of a glucosidase II enzyme. S.X. H.G.
0.67 81.6 At4g34450 829596 coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative F:protein binding, clathrin binding, structural molecule activity, binding;P:intracellular protein transport, vesicle-mediated transport;C:chloroplast, membrane;MFOPB S.X. H.G.
0.67 81.6 At5g61970 836318 signal recognition particle-related / SRP-related F:unknown;P:biological_process unknown;C:cellular_component unknown;MFOPBA S.X. H.G.
0.50 65.3 At2g21390 816678 coatomer protein complex, subunit alpha, putative F:protein binding, structural molecule activity, transporter activity;P:intracellular protein transport, vesicle-mediated transport, ER to Golgi vesicle-mediated transport;C:COPI vesicle coat, CUL4 RING ubiquitin ligase complex, membrane;MFOBPA S.X. H.G.
0.50 65.3 At3g26370 822241 unknown protein F:unknown;P:unknown;C:Golgi apparatus;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
14.7 99.4 GSM133774 Lindsey_1-26_torpedo-meristem_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
8.9 99.0 GSM265413 Arabidopsis, whole roots, -Fe, replicate 3 GSE10496 Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
7.4 98.8 GSM265411 Arabidopsis, whole roots, -Fe, replicate 1 GSE10496 Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
7.3 98.8 GSM265412 Arabidopsis, whole roots, -Fe, replicate 2 GSE10496 Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
6.8 98.7 GSM142662 MB002_ATH1_A2-Eland-ch2 GSE6153 Identification of genes involved in secondary cell wall development in the hypocotyls of short day grown Arabidopsis
6.8 98.7 GSM133726 McCormac_1-4_wildtype-NFtreated_Rep2_ATH1 GSE5726 Seedling transcriptome affected by Norflurazon-induced photobleaching of chloroplasts
6.8 98.7 GSM128662 Underwood_1-15_Cor-5x10e7-10h_Rep3_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
6.4 98.6 GSM265429 Arabidopsis, root, longitudinal zone 2, -Fe conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
6.4 98.6 GSM133978 Birnbaum_1-8_StageII-1_Rep1_ATH1 GSE5749 A gene expression map of the Arabidopsis root
5.9 98.5 GSM133979 Birnbaum_1-9_StageII-2_Rep2_ATH1 GSE5749 A gene expression map of the Arabidopsis root
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 1e-1 40 At5g40451 6241415 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBFPVA C.G. S.X.
0.01 1e-1 40 At3g49220 824083 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFM C.G. S.X.
0.01 5e-1 38 At5g64860 836609 DPE1 (DISPROPORTIONATING ENZYME) Encodes a maltotriose-metabolizing enzyme with chloroplastic α-1,4-glucanotransferase activity. Mutant has altered starch degradation. C.G. S.X.
0.00 5e-1 38 At5g40450 834043 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast, plasma membrane;MOBFPAV C.G. S.X.
0.01 5e-1 38 At3g19870 821524 binding F:binding;P:biological_process unknown;C:cellular_component unknown;MOP C.G. S.X.
0.01 5e-1 38 At3g29140 822562 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.01 5e-1 38 At2g35640 818133 hydroxyproline-rich glycoprotein family protein F:transcription factor activity;P:regulation of transcription;C:unknown;PMFOBV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 6e-1 38 Glycine max GmaAffx.86006.1.S1_at BE346856 - - 9e-2 At2g31600 unknown protein C.G. S.X.
0.01 2e-1 38 Hordeum vulgare Contig8614_at Contig8614 - - 1e-14 At2g18750 calmodulin-binding protein C.G. S.X.
0.03 1e-2 44 Oryza sativa Os02g0714500 AK066821.1 - TPR-like domain containing protein 8e-3 At5g65950 unknown protein C.G. S.X.
0.16 1e-20 103 Populus trichocarpa PtpAffx.210095.1.S1_at pmrna19883 hypothetical protein - 9e-21 At5g65950 unknown protein C.G. S.X.
0.03 5e-1 38 Triticum aestivum Ta.30319.1.S1_at CA728280 - - 7e-2 At5g65950 unknown protein C.G. S.X.
0.04 2e-13 77 Vitis vinifera 1622030_at CB343775 hypothetical protein LOC100265343 - 7e-14 At5g65950 unknown protein C.G. S.X.
0.01 3e+0 34 Zea mays ZmAffx.997.1.S1_at AI857164 - - 3e+0 At5g25990 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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