CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g65780

Gene name ATBCAT-5

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.48 62.5 At5g65780 836707 ATBCAT-5 encodes a chloroplast branched-chain amino acid aminotransferase, can complement the yeast leu/iso-leu/val auxotrophy mutant S.X. H.G.
0.67 81.6 At1g48420 841263 D-CDES (D-CYSTEINE DESULFHYDRASE) Encodes an enzyme that decomposes D-cysteine into pyruvate, H2S, and NH3. Only D-cysteine but not L-cysteine was converted by D-CDes to pyruvate, H2S, and NH3. Unlike homologous bacterial enzymes, it does not have 1-aminocyclopropane-1-carboxylate deaminase activity. S.X. H.G.
0.57 73.8 At2g24200 816954 cytosol aminopeptidase F:manganese ion binding, metalloexopeptidase activity, aminopeptidase activity;P:response to cadmium ion, proteolysis;C:vacuole;OBMPFA S.X. H.G.
0.55 70.6 At4g13430 826975 IIL1 (ISOPROPYL MALATE ISOMERASE LARGE SUBUNIT 1) F:4 iron, 4 sulfur cluster binding, lyase activity, hydro-lyase activity;P:response to cadmium ion, metabolic process;C:chloroplast stroma, chloroplast;OBFMAP S.X. H.G.
0.48 62.5 At4g13360 826967 catalytic F:catalytic activity;P:metabolic process;C:unknown;BOMFPA S.X. H.G.
0.36 43.6 At5g43940 834417 HOT5 (sensitive to hot temperatures 5) Encodes a glutathione-dependent formaldehyde dehydrogenase (also known as class III type alcohol dehydrogenase) reduces S-nitrosoglutathione (GSNO), the condensation product of glutathione and NO, that is a naturally occurring NO reservoir and also a reactive nitrogen intermediate. Gene expression is reduced by wounding and induced by salicylic acid. Is required for the acclimation of plants to high temperature and for fertility. S.X. H.G.
0.33 38.1 At1g79870 844326 oxidoreductase family protein F:in 6 functions;P:metabolic process;C:unknown;BOFMPAV S.X. H.G.
0.26 24.4 At1g78900 844228 VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A) Encodes catalytic subunit A of the vacuolar ATP synthase. Mutants are devoid of vacuolar ATPase activity as subunit A is encoded only by this gene and show strong defects in male gametophyte development and in Golgi stack morphology. S.X. H.G.
0.26 24.4 At3g10920 820263 MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) manganese superoxide dismutase (MSD1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
10.8 99.2 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
7.0 98.7 GSM75521 slr-1 6h NAA replicate 2 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
5.5 98.3 GSM133307 RIKEN-NAKABAYASHI3A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
5.4 98.3 GSM75511 Col-0 6h MOCK replicate 1 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
5.2 98.2 GSM133304 RIKEN-NAKABAYASHI1B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
5.1 98.2 E-ATMX-31-raw-cel-1516948018
5.1 98.2 E-ATMX-31-raw-cel-1516947984
4.8 98.0 E-MEXP-1474-raw-cel-1593932737
4.8 98.0 GSM131465 AtGen_6-9521_Heatstress(3h)+9hrecovery-Roots-12.0h_Rep1 GSE5628 AtGenExpress: Stress Treatments (Heat stress)
4.8 98.0 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.69 0 737 At3g49680 824130 BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3) Encodes a chloroplast branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant. C.G. S.X.
0.06 1e-2 42 At1g50110 841433 branched-chain amino acid aminotransferase 6 / branched-chain amino acid transaminase 6 (BCAT6) F:branched-chain-amino-acid transaminase activity, catalytic activity;P:branched chain family amino acid metabolic process, metabolic process;C:cellular_component unknown;BOFMPA C.G. S.X.
0.02 6e-1 36 At5g27560 832816 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OBP C.G. S.X.
0.04 6e-1 36 At1g10060 837542 branched-chain amino acid aminotransferase 1 / branched-chain amino acid transaminase 1 (BCAT1) encodes a mitochondrial branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant. C.G. S.X.
0.02 6e-1 36 At1g65230 842830 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PB C.G. S.X.
0.01 2e+0 34 At5g41790 834184 CIP1 (COP1-INTERACTIVE PROTEIN 1) encodes a protein that physically interacts specifically with the putative coiled-coil region of COP1 in vitro. In hypocotyl and cotyledon protoplasts, it is associated to the cytoskeleton, but not in the root. expression is not regulated by light. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.33 1e-33 145 Glycine max GmaAffx.49521.2.S1_at BF066739 - - 5e-34 At5g65780 ATBCAT-5 C.G. S.X.
0.22 6e-15 81 Hordeum vulgare Contig20424_at Contig20424 - - 2e-12 At3g49680 BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3) C.G. S.X.
0.26 2e-18 95 Oryza sativa Os05g0558400 AK072756.1 - Branched-chain-amino-acid aminotransferase 3,chloroplast precursor (EC 2.6.1.42) (Atbcat-3) 5e-24 At5g65780 ATBCAT-5 C.G. S.X.
0.43 3e-53 210 Populus trichocarpa PtpAffx.41318.1.S1_a_at CV265728 hypothetical protein - 3e-53 At5g65780 ATBCAT-5 C.G. S.X.
0.08 2e-4 48 Triticum aestivum TaAffx.129158.1.A1_at CA673700 - - 8e-3 At3g49680 BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3) C.G. S.X.
0.27 2e-32 139 Vitis vinifera 1622060_at BM436271 - - 3e-32 At5g65780 ATBCAT-5 C.G. S.X.
0.12 1e-18 93 Zea mays Zm.2520.1.A1_at AW400289 hypothetical protein LOC100191754 - 5e-21 At3g49680 BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0008152 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
L GO:0009081 The chemical reactions and pathways involving amino acids containing a branched carbon skeleton, comprising isoleucine, leucine and valine.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00009 Leucine, valine, isoleucine and alanine biosynthesis
00077 Leucine, valine and isoleucine metabolism

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00280 Valine, leucine and isoleucine degradation
00290 Valine, leucine and isoleucine biosynthesis
00770 Pantothenate and CoA biosynthesis
00966 Glucosinolate biosynthesis
01063 Biosynthesis of alkaloids derived from shikimate pathway
01065 Biosynthesis of alkaloids derived from histidine and purine
01100 Metabolic pathways
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